Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17200 | 3' | -49.2 | NC_004333.2 | + | 8710 | 0.68 | 0.886046 |
Target: 5'- cCGGGCGCCgcgccgaGCucGACGUCGcgcAUCg -3' miRNA: 3'- -GCCUGCGGag-----CGuuCUGUAGUuu-UAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 27691 | 0.68 | 0.87808 |
Target: 5'- --cGCGCUgcaGCGAGACGUCGuAGGUCa -3' miRNA: 3'- gccUGCGGag-CGUUCUGUAGU-UUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 9247 | 0.68 | 0.87808 |
Target: 5'- gGGGCGCCUCGCcgcgugcGGCAUagccuUCg -3' miRNA: 3'- gCCUGCGGAGCGuu-----CUGUAguuuuAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 21185 | 0.68 | 0.869831 |
Target: 5'- aGGGCG-CUCGCGA-ACAUCAGAc-- -3' miRNA: 3'- gCCUGCgGAGCGUUcUGUAGUUUuag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 30457 | 0.68 | 0.869831 |
Target: 5'- cCGGuCGCUUCGaCGuucGGCAUCGcgGUCg -3' miRNA: 3'- -GCCuGCGGAGC-GUu--CUGUAGUuuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 31383 | 0.69 | 0.814876 |
Target: 5'- gCGGGCGCCgUGCucGGCGUCGGc--- -3' miRNA: 3'- -GCCUGCGGaGCGuuCUGUAGUUuuag -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 7680 | 0.7 | 0.804903 |
Target: 5'- -aGACGCaaUCGCAGGGCAUCA---UCa -3' miRNA: 3'- gcCUGCGg-AGCGUUCUGUAGUuuuAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 11956 | 0.7 | 0.804903 |
Target: 5'- gCGGucgaGCGCCUUGCAcGcGCGUCGAcGAUCg -3' miRNA: 3'- -GCC----UGCGGAGCGUuC-UGUAGUU-UUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 15821 | 0.7 | 0.794727 |
Target: 5'- -cGACGCCUgcgcacguucCGCAGGuCAUCAuuGUCc -3' miRNA: 3'- gcCUGCGGA----------GCGUUCuGUAGUuuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 13848 | 0.7 | 0.794727 |
Target: 5'- aCGGGCGCCgCGuCGAGcGCAUUGAGcgCg -3' miRNA: 3'- -GCCUGCGGaGC-GUUC-UGUAGUUUuaG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 7152 | 0.7 | 0.794727 |
Target: 5'- uGuACGCaacugCGCGAGACGUCAAcAUCa -3' miRNA: 3'- gCcUGCGga---GCGUUCUGUAGUUuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 36364 | 0.7 | 0.780166 |
Target: 5'- uCGGGCGgCgcguaucgcauggCGCAGGACGUCGcguGUCg -3' miRNA: 3'- -GCCUGCgGa------------GCGUUCUGUAGUuu-UAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 39867 | 0.7 | 0.77382 |
Target: 5'- uCGGACgGCCacagCGCGAGcgGCGUCGgucGGAUCg -3' miRNA: 3'- -GCCUG-CGGa---GCGUUC--UGUAGU---UUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 37363 | 0.7 | 0.763116 |
Target: 5'- uGGaACGCgUCGCcuucGACAUCGAcGUCg -3' miRNA: 3'- gCC-UGCGgAGCGuu--CUGUAGUUuUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 38804 | 0.72 | 0.696209 |
Target: 5'- gGGGCGCC--GCGAGACGgagGAGAUCa -3' miRNA: 3'- gCCUGCGGagCGUUCUGUag-UUUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 13017 | 0.72 | 0.684738 |
Target: 5'- cCGGgcaucaACGCCUgCGCGAGGucCAUCAAGAUg -3' miRNA: 3'- -GCC------UGCGGA-GCGUUCU--GUAGUUUUAg -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 46198 | 0.72 | 0.672055 |
Target: 5'- uGGGCGCguCUCGCGccggaucagcgccAGGCGcUCGAAGUCa -3' miRNA: 3'- gCCUGCG--GAGCGU-------------UCUGU-AGUUUUAG- -5' |
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17200 | 3' | -49.2 | NC_004333.2 | + | 40045 | 1.12 | 0.002353 |
Target: 5'- gCGGACGCCUCGCAAGACAUCAAAAUCg -3' miRNA: 3'- -GCCUGCGGAGCGUUCUGUAGUUUUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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