miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17200 5' -50.4 NC_004333.2 + 28837 0.66 0.927706
Target:  5'- --cGCCGCGAcccgCGCGGUCgAcGCGg -3'
miRNA:   3'- ucuUGGCGCUaua-GUGCUAGgUaCGC- -5'
17200 5' -50.4 NC_004333.2 + 11984 0.66 0.921642
Target:  5'- -cGAUCGCGGccgUAUCGCGGUgCAacggaUGCGg -3'
miRNA:   3'- ucUUGGCGCU---AUAGUGCUAgGU-----ACGC- -5'
17200 5' -50.4 NC_004333.2 + 36277 0.66 0.915279
Target:  5'- -cGACaCGCGAcGUCcUGcgCCAUGCGa -3'
miRNA:   3'- ucUUG-GCGCUaUAGuGCuaGGUACGC- -5'
17200 5' -50.4 NC_004333.2 + 9044 0.66 0.915279
Target:  5'- --cGCCGCGcacggccgCACGAUCCAgcccGCGc -3'
miRNA:   3'- ucuUGGCGCuaua----GUGCUAGGUa---CGC- -5'
17200 5' -50.4 NC_004333.2 + 28730 0.66 0.901662
Target:  5'- cGGAAuuCUGCGAc--CGCGAUCCG-GCGa -3'
miRNA:   3'- -UCUU--GGCGCUauaGUGCUAGGUaCGC- -5'
17200 5' -50.4 NC_004333.2 + 36435 0.67 0.886879
Target:  5'- cGAcCUGgGAUAUCACGA-CCgAUGCu -3'
miRNA:   3'- uCUuGGCgCUAUAGUGCUaGG-UACGc -5'
17200 5' -50.4 NC_004333.2 + 47208 0.67 0.882222
Target:  5'- gGGGACgaaCGCGAUGUCauccggccaggaugcGCGAUCCggGUa -3'
miRNA:   3'- -UCUUG---GCGCUAUAG---------------UGCUAGGuaCGc -5'
17200 5' -50.4 NC_004333.2 + 36056 0.68 0.853987
Target:  5'- -cGACCGCGAaccagGUCGCGAgcaCgGUGCu -3'
miRNA:   3'- ucUUGGCGCUa----UAGUGCUa--GgUACGc -5'
17200 5' -50.4 NC_004333.2 + 16532 0.68 0.853987
Target:  5'- cGGGCCGCGAgcgGUgGCGcaacugCCcgGCGu -3'
miRNA:   3'- uCUUGGCGCUa--UAgUGCua----GGuaCGC- -5'
17200 5' -50.4 NC_004333.2 + 18792 0.68 0.845114
Target:  5'- uGAACCGCGcuUAUCGCGcggCCGcaggGCGc -3'
miRNA:   3'- uCUUGGCGCu-AUAGUGCua-GGUa---CGC- -5'
17200 5' -50.4 NC_004333.2 + 35843 0.68 0.845114
Target:  5'- cAGAuacuucGCCGCguuGAUGUCaguGCGAUCCAaGCa -3'
miRNA:   3'- -UCU------UGGCG---CUAUAG---UGCUAGGUaCGc -5'
17200 5' -50.4 NC_004333.2 + 18971 0.68 0.835999
Target:  5'- cGAACCGCGAgaa-GCuGAUCUgcgAUGCGc -3'
miRNA:   3'- uCUUGGCGCUauagUG-CUAGG---UACGC- -5'
17200 5' -50.4 NC_004333.2 + 39060 0.68 0.826652
Target:  5'- cGGACgGCGAguacgCGCGAcUCGUGCGc -3'
miRNA:   3'- uCUUGgCGCUaua--GUGCUaGGUACGC- -5'
17200 5' -50.4 NC_004333.2 + 28315 0.69 0.807303
Target:  5'- aGGAgcGCCGCGcgcgcGUCACGGUCaCGUGaCGc -3'
miRNA:   3'- -UCU--UGGCGCua---UAGUGCUAG-GUAC-GC- -5'
17200 5' -50.4 NC_004333.2 + 43611 0.69 0.807303
Target:  5'- aAGAAUCGCuacccggacGAgcUCACGGcCCGUGCGu -3'
miRNA:   3'- -UCUUGGCG---------CUauAGUGCUaGGUACGC- -5'
17200 5' -50.4 NC_004333.2 + 3654 0.71 0.700614
Target:  5'- cGAucGCCGCGAUGUgGCGcaCUAUGUGg -3'
miRNA:   3'- uCU--UGGCGCUAUAgUGCuaGGUACGC- -5'
17200 5' -50.4 NC_004333.2 + 29357 0.71 0.689336
Target:  5'- cGGAUCGCGAUGgaCGCGAUCaaaGCGg -3'
miRNA:   3'- uCUUGGCGCUAUa-GUGCUAGguaCGC- -5'
17200 5' -50.4 NC_004333.2 + 29279 0.72 0.643752
Target:  5'- cGAGCCGCuuugAUCGCG-UCCAUcGCGa -3'
miRNA:   3'- uCUUGGCGcua-UAGUGCuAGGUA-CGC- -5'
17200 5' -50.4 NC_004333.2 + 40151 0.77 0.359319
Target:  5'- uGGAUCGUGAUAUCGCGGUUCuUGCc -3'
miRNA:   3'- uCUUGGCGCUAUAGUGCUAGGuACGc -5'
17200 5' -50.4 NC_004333.2 + 40081 1.11 0.002233
Target:  5'- aAGAACCGCGAUAUCACGAUCCAUGCGg -3'
miRNA:   3'- -UCUUGGCGCUAUAGUGCUAGGUACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.