miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17202 3' -53.9 NC_004333.2 + 1862 0.66 0.728641
Target:  5'- --uGAcUAUCGGCUCGAaCGCCGUGAu -3'
miRNA:   3'- uuuCUuGUGGUUGGGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 18682 0.66 0.728641
Target:  5'- gAAAGggUugCcGCCCGcgCcuGCCGCGc -3'
miRNA:   3'- -UUUCuuGugGuUGGGCuaG--CGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 31319 0.66 0.728641
Target:  5'- --cGAACACCGAgaCGGcgcugCGCCGCGc -3'
miRNA:   3'- uuuCUUGUGGUUggGCUa----GCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 10738 0.66 0.717738
Target:  5'- --cGuGCACCGGCCgGcgCGaCCGUGAc -3'
miRNA:   3'- uuuCuUGUGGUUGGgCuaGC-GGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 30002 0.66 0.717738
Target:  5'- --cGAGCACCAugcgGCgCCGcUCGUCGgGAu -3'
miRNA:   3'- uuuCUUGUGGU----UG-GGCuAGCGGCgCU- -5'
17202 3' -53.9 NC_004333.2 + 25735 0.66 0.717738
Target:  5'- ---cAGCugCAGgCCGGUCGgCGUGAa -3'
miRNA:   3'- uuucUUGugGUUgGGCUAGCgGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 14029 0.66 0.717738
Target:  5'- --cGGcCGCCGGCCUGAagUCGCCaagGCGGc -3'
miRNA:   3'- uuuCUuGUGGUUGGGCU--AGCGG---CGCU- -5'
17202 3' -53.9 NC_004333.2 + 32408 0.66 0.717738
Target:  5'- --cGGGCAgCGACCCGGcaGCCGUGc -3'
miRNA:   3'- uuuCUUGUgGUUGGGCUagCGGCGCu -5'
17202 3' -53.9 NC_004333.2 + 4858 0.66 0.706746
Target:  5'- --cGcGCGCCGugCCGAU-GCCGCu- -3'
miRNA:   3'- uuuCuUGUGGUugGGCUAgCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 18151 0.67 0.695677
Target:  5'- --cGAACGCCAcgagcaagaAgCCGAUUGCCgGCGu -3'
miRNA:   3'- uuuCUUGUGGU---------UgGGCUAGCGG-CGCu -5'
17202 3' -53.9 NC_004333.2 + 17188 0.67 0.695677
Target:  5'- --cGAGCcCCGAUCUGuuuAUCGUCGCGGg -3'
miRNA:   3'- uuuCUUGuGGUUGGGC---UAGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 29877 0.67 0.695677
Target:  5'- ---cAGCAUCAacgGCCCGGugaccgUCGUCGCGAa -3'
miRNA:   3'- uuucUUGUGGU---UGGGCU------AGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 6824 0.67 0.684544
Target:  5'- cGAG-GCGCgCGACCgGggCGCCGUGGc -3'
miRNA:   3'- uUUCuUGUG-GUUGGgCuaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 12432 0.67 0.684544
Target:  5'- --cGGGCGCUAcggcgccCCCGAcCGUCGCGAa -3'
miRNA:   3'- uuuCUUGUGGUu------GGGCUaGCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 45633 0.67 0.673357
Target:  5'- --cGAGCGCCAugaGCaCCGAguauUCGCaaaGCGAc -3'
miRNA:   3'- uuuCUUGUGGU---UG-GGCU----AGCGg--CGCU- -5'
17202 3' -53.9 NC_004333.2 + 21472 0.67 0.673357
Target:  5'- --cGAAUGCCGG-CCGAUUGCCuauGCGAc -3'
miRNA:   3'- uuuCUUGUGGUUgGGCUAGCGG---CGCU- -5'
17202 3' -53.9 NC_004333.2 + 46913 0.67 0.673357
Target:  5'- ----uGCugCAGCgCCGcgagCGCCGCGAa -3'
miRNA:   3'- uuucuUGugGUUG-GGCua--GCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 17618 0.67 0.66213
Target:  5'- cAAG-ACGCCGgccgcGCCCGGU-GCCGUGGc -3'
miRNA:   3'- uUUCuUGUGGU-----UGGGCUAgCGGCGCU- -5'
17202 3' -53.9 NC_004333.2 + 43057 0.67 0.66213
Target:  5'- ---cGACACCGACgCCGAacgugaCGCCGCa- -3'
miRNA:   3'- uuucUUGUGGUUG-GGCUa-----GCGGCGcu -5'
17202 3' -53.9 NC_004333.2 + 48172 0.67 0.66213
Target:  5'- -cGGuGCGCgcGCCCGGUUGCCGCc- -3'
miRNA:   3'- uuUCuUGUGguUGGGCUAGCGGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.