miRNA display CGI


Results 21 - 40 of 102 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 3' -55 NC_004333.2 + 33686 0.66 0.665194
Target:  5'- uGCGACGCCcccugcgguagauGGUACAagCGUCAaCGUCc -3'
miRNA:   3'- uCGUUGUGG-------------CCGUGUa-GCAGUcGCAG- -5'
17204 3' -55 NC_004333.2 + 11912 0.66 0.661841
Target:  5'- aAGCGAUguACCGGCGCAagcuggagcgcgcCGUCGcgcugauggccGCGUCg -3'
miRNA:   3'- -UCGUUG--UGGCCGUGUa------------GCAGU-----------CGCAG- -5'
17204 3' -55 NC_004333.2 + 32721 0.66 0.655129
Target:  5'- cGGCAGCgauaGCCGGCgaGCAgaaCGUCAcGCG-Ca -3'
miRNA:   3'- -UCGUUG----UGGCCG--UGUa--GCAGU-CGCaG- -5'
17204 3' -55 NC_004333.2 + 22957 0.66 0.655129
Target:  5'- cGGCAAgcuguucgcCGCCGGCAgCGUCG-CGGUaccgGUCg -3'
miRNA:   3'- -UCGUU---------GUGGCCGU-GUAGCaGUCG----CAG- -5'
17204 3' -55 NC_004333.2 + 17696 0.66 0.655129
Target:  5'- cGGCcacGGCACCgGGCGCGgc--CGGCGUCu -3'
miRNA:   3'- -UCG---UUGUGG-CCGUGUagcaGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 20711 0.66 0.655129
Target:  5'- cGCAGCGCCGuuGCGaCGcUC-GCGUCg -3'
miRNA:   3'- uCGUUGUGGCcgUGUaGC-AGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 17514 0.66 0.648408
Target:  5'- cGCcACAuCCGGUGCccgggcgacguuuugAUCGUCAgcGCGUCg -3'
miRNA:   3'- uCGuUGU-GGCCGUG---------------UAGCAGU--CGCAG- -5'
17204 3' -55 NC_004333.2 + 21538 0.66 0.648408
Target:  5'- aGGCAAUcgGCCGGCAUucgaacacuuguacaGUucCGUCcGCGUCc -3'
miRNA:   3'- -UCGUUG--UGGCCGUG---------------UA--GCAGuCGCAG- -5'
17204 3' -55 NC_004333.2 + 31235 0.66 0.648408
Target:  5'- cGCGACggccGCgCGGCGCAgcgccgucucgguguUCGUCAGUG-Ca -3'
miRNA:   3'- uCGUUG----UG-GCCGUGU---------------AGCAGUCGCaG- -5'
17204 3' -55 NC_004333.2 + 28690 0.66 0.643924
Target:  5'- cAGCGA-GCUGGUACAUCGgaUUAGCcuGUCg -3'
miRNA:   3'- -UCGUUgUGGCCGUGUAGC--AGUCG--CAG- -5'
17204 3' -55 NC_004333.2 + 12468 0.66 0.643924
Target:  5'- -----gGCCGGCACGcccgggUCGUCAuucGCGUCc -3'
miRNA:   3'- ucguugUGGCCGUGU------AGCAGU---CGCAG- -5'
17204 3' -55 NC_004333.2 + 26658 0.66 0.643924
Target:  5'- gAGCGugaucGCGCCGGCugc-CGaUAGCGUCa -3'
miRNA:   3'- -UCGU-----UGUGGCCGuguaGCaGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 44948 0.66 0.643924
Target:  5'- cGGCAGCuauCCuGCGCGcgcaCGUCGGCGg- -3'
miRNA:   3'- -UCGUUGu--GGcCGUGUa---GCAGUCGCag -5'
17204 3' -55 NC_004333.2 + 18554 0.67 0.632709
Target:  5'- uGCGGCAgCCGGCGCGg---CGGCGa- -3'
miRNA:   3'- uCGUUGU-GGCCGUGUagcaGUCGCag -5'
17204 3' -55 NC_004333.2 + 10946 0.67 0.632709
Target:  5'- uGUcGCGCCGGCGuucuucCcgCG-CGGCGUCa -3'
miRNA:   3'- uCGuUGUGGCCGU------GuaGCaGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 11908 0.67 0.632709
Target:  5'- cGCGGC-CCGGCAUG-CG-CAGCGg- -3'
miRNA:   3'- uCGUUGuGGCCGUGUaGCaGUCGCag -5'
17204 3' -55 NC_004333.2 + 17142 0.67 0.632709
Target:  5'- cAGCAGCGCauGCGCGaggaagUCGUgcGCGUCg -3'
miRNA:   3'- -UCGUUGUGgcCGUGU------AGCAguCGCAG- -5'
17204 3' -55 NC_004333.2 + 25105 0.67 0.632709
Target:  5'- cGCGACGaacuacccgauuCCGGCGCAcuccguggCGaUCAGCGUg -3'
miRNA:   3'- uCGUUGU------------GGCCGUGUa-------GC-AGUCGCAg -5'
17204 3' -55 NC_004333.2 + 20455 0.67 0.621493
Target:  5'- aAGCcuGCGCCGGUcgugacGCAgccgGUUAGCGUCc -3'
miRNA:   3'- -UCGu-UGUGGCCG------UGUag--CAGUCGCAG- -5'
17204 3' -55 NC_004333.2 + 39015 0.67 0.621493
Target:  5'- aAGCGGCgauuGCCGGuCGCGUCGUgGuuCGUCu -3'
miRNA:   3'- -UCGUUG----UGGCC-GUGUAGCAgUc-GCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.