miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17204 5' -54 NC_004333.2 + 6870 0.66 0.732299
Target:  5'- uGCGACagGCGaagaUCGGCGCGCUG-UCGUa -3'
miRNA:   3'- -UGCUG--CGCga--AGUUGCGCGGUaAGCA- -5'
17204 5' -54 NC_004333.2 + 37366 0.66 0.721491
Target:  5'- cGCGACGUGCaccgCGucGCGCGgCCGUccucaUCGUc -3'
miRNA:   3'- -UGCUGCGCGaa--GU--UGCGC-GGUA-----AGCA- -5'
17204 5' -54 NC_004333.2 + 12987 0.66 0.721491
Target:  5'- uCGGCGCGCaUCGAcaaaucgacguuCGCGCCGggCa- -3'
miRNA:   3'- uGCUGCGCGaAGUU------------GCGCGGUaaGca -5'
17204 5' -54 NC_004333.2 + 11513 0.66 0.721491
Target:  5'- cACGAgGCGCUgCGAagGCGUCAUgUCGa -3'
miRNA:   3'- -UGCUgCGCGAaGUUg-CGCGGUA-AGCa -5'
17204 5' -54 NC_004333.2 + 25415 0.66 0.721491
Target:  5'- uACGACGCaacgacCggCAACGCGaCCGUUaCGUa -3'
miRNA:   3'- -UGCUGCGc-----GaaGUUGCGC-GGUAA-GCA- -5'
17204 5' -54 NC_004333.2 + 28866 0.67 0.710591
Target:  5'- cCGGCGCGC-UCAAgcgcuCGUGCCGcgCGa -3'
miRNA:   3'- uGCUGCGCGaAGUU-----GCGCGGUaaGCa -5'
17204 5' -54 NC_004333.2 + 10631 0.67 0.710591
Target:  5'- uGCGAUGCGCccgauaAACGCGCgAUggcCGUc -3'
miRNA:   3'- -UGCUGCGCGaag---UUGCGCGgUAa--GCA- -5'
17204 5' -54 NC_004333.2 + 35958 0.67 0.710591
Target:  5'- aACGGCGUGCgcgucgCAACGgGCCGg---- -3'
miRNA:   3'- -UGCUGCGCGaa----GUUGCgCGGUaagca -5'
17204 5' -54 NC_004333.2 + 38236 0.67 0.710591
Target:  5'- --aGCGCGC-----CGCGCCGUUCGUc -3'
miRNA:   3'- ugcUGCGCGaaguuGCGCGGUAAGCA- -5'
17204 5' -54 NC_004333.2 + 47303 0.67 0.709497
Target:  5'- uGCGAUGCucaauccGCUcgaaagUAGCGCGCCcgUCGc -3'
miRNA:   3'- -UGCUGCG-------CGAa-----GUUGCGCGGuaAGCa -5'
17204 5' -54 NC_004333.2 + 41120 0.67 0.709497
Target:  5'- gGCGGCGCGaaacgugUCGacgaucguGCGCGCCGUcuucauaUCGa -3'
miRNA:   3'- -UGCUGCGCga-----AGU--------UGCGCGGUA-------AGCa -5'
17204 5' -54 NC_004333.2 + 6641 0.67 0.699612
Target:  5'- uCGAuCGCGCUcggCAGCGCGCUcggCGc -3'
miRNA:   3'- uGCU-GCGCGAa--GUUGCGCGGuaaGCa -5'
17204 5' -54 NC_004333.2 + 9139 0.67 0.696304
Target:  5'- cGCGAgGCGCUcacgcagaucggcgUCGACGUGUCGcaggUCGc -3'
miRNA:   3'- -UGCUgCGCGA--------------AGUUGCGCGGUa---AGCa -5'
17204 5' -54 NC_004333.2 + 39677 0.67 0.688564
Target:  5'- gGCGGCGCGCUuccuggUCGGCcugccuGCGCCAc---- -3'
miRNA:   3'- -UGCUGCGCGA------AGUUG------CGCGGUaagca -5'
17204 5' -54 NC_004333.2 + 6601 0.67 0.688564
Target:  5'- cACGGCGCGCcgCccaGCGCCGcagUCGc -3'
miRNA:   3'- -UGCUGCGCGaaGuugCGCGGUa--AGCa -5'
17204 5' -54 NC_004333.2 + 36361 0.67 0.67746
Target:  5'- gGCGGCGCGUaucgCAugGCGCaggacgUCGc -3'
miRNA:   3'- -UGCUGCGCGaa--GUugCGCGgua---AGCa -5'
17204 5' -54 NC_004333.2 + 38230 0.67 0.67746
Target:  5'- aGCGGCGUGCcaagaUCGGCG-GCCGggUCGg -3'
miRNA:   3'- -UGCUGCGCGa----AGUUGCgCGGUa-AGCa -5'
17204 5' -54 NC_004333.2 + 47481 0.67 0.66631
Target:  5'- gGCGAcugcCGCGCUgaaCGAgGCGCCGgcCGg -3'
miRNA:   3'- -UGCU----GCGCGAa--GUUgCGCGGUaaGCa -5'
17204 5' -54 NC_004333.2 + 26701 0.67 0.66631
Target:  5'- aGCGGCgGUGCgacaacgaUCAACGCcGCCAgcuuugUCGUg -3'
miRNA:   3'- -UGCUG-CGCGa-------AGUUGCG-CGGUa-----AGCA- -5'
17204 5' -54 NC_004333.2 + 19570 0.67 0.655129
Target:  5'- cACGA-GCGCcgcCAGCGCGCCAgcgcCGa -3'
miRNA:   3'- -UGCUgCGCGaa-GUUGCGCGGUaa--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.