miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17205 3' -63.6 NC_004333.2 + 16002 0.66 0.314002
Target:  5'- cUUGCCCcgauuguggcggcGAUGGCAcCGugGGCGgUCGc -3'
miRNA:   3'- cGACGGG-------------CUGCCGU-GCugCCGCgGGC- -5'
17205 3' -63.6 NC_004333.2 + 38623 0.66 0.307466
Target:  5'- cGCUGCCCGugGuGCcCGuucugauCGGC-CCgGg -3'
miRNA:   3'- -CGACGGGCugC-CGuGCu------GCCGcGGgC- -5'
17205 3' -63.6 NC_004333.2 + 19968 0.66 0.307466
Target:  5'- uUUGCCCGACuGCGCGcuguCGGC-CUCa -3'
miRNA:   3'- cGACGGGCUGcCGUGCu---GCCGcGGGc -5'
17205 3' -63.6 NC_004333.2 + 14168 0.66 0.307466
Target:  5'- --aGCgUCGACGGCAUGACGaucGCGCUg- -3'
miRNA:   3'- cgaCG-GGCUGCCGUGCUGC---CGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 40266 0.66 0.307466
Target:  5'- aGCUGCCaaGCGGgAauCGGCGGaugauCGCCCa -3'
miRNA:   3'- -CGACGGgcUGCCgU--GCUGCC-----GCGGGc -5'
17205 3' -63.6 NC_004333.2 + 33126 0.66 0.307466
Target:  5'- aGC-GCUCGugGccgaccgcuacGCACGuGCGGCGCUCa -3'
miRNA:   3'- -CGaCGGGCugC-----------CGUGC-UGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 45135 0.66 0.307466
Target:  5'- cUUGCCCGggcGCGGC-CGcGCGGUGUUCa -3'
miRNA:   3'- cGACGGGC---UGCCGuGC-UGCCGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 48181 0.66 0.307466
Target:  5'- -aUGCCgGcGCGGUGCG-C-GCGCCCGg -3'
miRNA:   3'- cgACGGgC-UGCCGUGCuGcCGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 2482 0.66 0.307466
Target:  5'- cGCUGCCgcUGuACGGCgaccagGCGAccgcCGGCGCCg- -3'
miRNA:   3'- -CGACGG--GC-UGCCG------UGCU----GCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 19607 0.66 0.300326
Target:  5'- cGCgaacaagGUCaCGGCGaGCGCGGCGaGCGCggCCGa -3'
miRNA:   3'- -CGa------CGG-GCUGC-CGUGCUGC-CGCG--GGC- -5'
17205 3' -63.6 NC_004333.2 + 11193 0.66 0.300326
Target:  5'- uGCUGCCCGGCGagGCGAUuucGUGCCg- -3'
miRNA:   3'- -CGACGGGCUGCcgUGCUGc--CGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 35565 0.66 0.296104
Target:  5'- uGCcGCUCGcagGCGGCACgcucaccggcccguuGACGGUGCCg- -3'
miRNA:   3'- -CGaCGGGC---UGCCGUG---------------CUGCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 28777 0.66 0.296104
Target:  5'- cGCggGUCgCGGCGGCGCGACuucccaucgcguauaGuGCGUCCa -3'
miRNA:   3'- -CGa-CGG-GCUGCCGUGCUG---------------C-CGCGGGc -5'
17205 3' -63.6 NC_004333.2 + 36079 0.66 0.293315
Target:  5'- aGCUgGCCCGugacGCGGCGCuGCG-CGCCa- -3'
miRNA:   3'- -CGA-CGGGC----UGCCGUGcUGCcGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 32528 0.66 0.293315
Target:  5'- uGCgGCUCGucGCGGCGCuGAagGGCGCCg- -3'
miRNA:   3'- -CGaCGGGC--UGCCGUG-CUg-CCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 37671 0.66 0.293315
Target:  5'- cGC-GCCCGACccGCuCGuCGGCcgGCCCGg -3'
miRNA:   3'- -CGaCGGGCUGc-CGuGCuGCCG--CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 25603 0.66 0.293315
Target:  5'- cGCUGaCCuCGAgCGGCGCGuACcaagacGCGCUCGg -3'
miRNA:   3'- -CGAC-GG-GCU-GCCGUGC-UGc-----CGCGGGC- -5'
17205 3' -63.6 NC_004333.2 + 45003 0.66 0.293315
Target:  5'- aGCUGCCgacuucuuCGGCGcGCGCGACGcaucgagacGCaGCUCGa -3'
miRNA:   3'- -CGACGG--------GCUGC-CGUGCUGC---------CG-CGGGC- -5'
17205 3' -63.6 NC_004333.2 + 619 0.66 0.293315
Target:  5'- -gUGCCCGACaGCGgGcCGGUGCUg- -3'
miRNA:   3'- cgACGGGCUGcCGUgCuGCCGCGGgc -5'
17205 3' -63.6 NC_004333.2 + 27424 0.66 0.293315
Target:  5'- cCUGCgcggCGACGGCuguCGACcaGGCGCCa- -3'
miRNA:   3'- cGACGg---GCUGCCGu--GCUG--CCGCGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.