miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17206 3' -58.5 NC_004333.2 + 17628 0.66 0.504688
Target:  5'- -aGGuCGUCGUGCaGCGCuuCGGGGa- -3'
miRNA:   3'- uaUC-GCAGCACGaCGCGcuGCUCCgc -5'
17206 3' -58.5 NC_004333.2 + 42015 0.66 0.504688
Target:  5'- --uGCG-CGUGaaGCGCGcggccaacgaGCGGGGCGu -3'
miRNA:   3'- uauCGCaGCACgaCGCGC----------UGCUCCGC- -5'
17206 3' -58.5 NC_004333.2 + 19495 0.66 0.484177
Target:  5'- --cGCGUgaaCGUcGCggguaGCGCGGCGuAGGCGu -3'
miRNA:   3'- uauCGCA---GCA-CGa----CGCGCUGC-UCCGC- -5'
17206 3' -58.5 NC_004333.2 + 13898 0.66 0.46308
Target:  5'- -cGGCa-CGgGCUGCGCGGCGGcugccguGGCGa -3'
miRNA:   3'- uaUCGcaGCaCGACGCGCUGCU-------CCGC- -5'
17206 3' -58.5 NC_004333.2 + 17476 0.67 0.454187
Target:  5'- --cGCGUCGUgaccgcGCUGCGCGAgcagcuCGAuGCGc -3'
miRNA:   3'- uauCGCAGCA------CGACGCGCU------GCUcCGC- -5'
17206 3' -58.5 NC_004333.2 + 37428 0.67 0.415829
Target:  5'- -cGGCGUgcaCGUGUacugcgGCGUGACGAacGGCGc -3'
miRNA:   3'- uaUCGCA---GCACGa-----CGCGCUGCU--CCGC- -5'
17206 3' -58.5 NC_004333.2 + 11714 0.68 0.379521
Target:  5'- -gGGCGgCGUGCuggcguccUGCGCGAUGuccGGCa -3'
miRNA:   3'- uaUCGCaGCACG--------ACGCGCUGCu--CCGc -5'
17206 3' -58.5 NC_004333.2 + 3993 0.68 0.379521
Target:  5'- -cGGCGUUuagcUGCUGCGUGACcucgaAGGCGc -3'
miRNA:   3'- uaUCGCAGc---ACGACGCGCUGc----UCCGC- -5'
17206 3' -58.5 NC_004333.2 + 3900 0.68 0.370781
Target:  5'- cAUGGUGUCGUGgUaGCGCcaGGCGGcagcGGCGg -3'
miRNA:   3'- -UAUCGCAGCACgA-CGCG--CUGCU----CCGC- -5'
17206 3' -58.5 NC_004333.2 + 20644 0.68 0.353719
Target:  5'- -gAGCGUCGcaacggcGCUGCGCcaguGGCagGAGGCGc -3'
miRNA:   3'- uaUCGCAGCa------CGACGCG----CUG--CUCCGC- -5'
17206 3' -58.5 NC_004333.2 + 15147 0.69 0.345398
Target:  5'- uUGGCGUCG-GUUGaguuGCGGCGAGcgaGCGg -3'
miRNA:   3'- uAUCGCAGCaCGACg---CGCUGCUC---CGC- -5'
17206 3' -58.5 NC_004333.2 + 30376 0.69 0.329181
Target:  5'- gGUGGUGUCGcag-GCGCGACGGcGGCc -3'
miRNA:   3'- -UAUCGCAGCacgaCGCGCUGCU-CCGc -5'
17206 3' -58.5 NC_004333.2 + 28877 0.69 0.329181
Target:  5'- -aAGCGcUCGUGCcGCGCGAuCGcgcucGGCGc -3'
miRNA:   3'- uaUCGC-AGCACGaCGCGCU-GCu----CCGC- -5'
17206 3' -58.5 NC_004333.2 + 30624 0.69 0.321286
Target:  5'- -cAG-GUCGUGCagcaGCGCGGCaAGGCGc -3'
miRNA:   3'- uaUCgCAGCACGa---CGCGCUGcUCCGC- -5'
17206 3' -58.5 NC_004333.2 + 45957 0.69 0.313533
Target:  5'- -gAGCGgauGUGU--CGCGGCGAGGCGu -3'
miRNA:   3'- uaUCGCag-CACGacGCGCUGCUCCGC- -5'
17206 3' -58.5 NC_004333.2 + 32429 0.7 0.29113
Target:  5'- ---aCGUCGUGCUGCGC-ACGcuaucGGGCa -3'
miRNA:   3'- uaucGCAGCACGACGCGcUGC-----UCCGc -5'
17206 3' -58.5 NC_004333.2 + 31381 0.7 0.276902
Target:  5'- -gGGCGcCGUGCUcgGCGuCGGCGcAGGUGc -3'
miRNA:   3'- uaUCGCaGCACGA--CGC-GCUGC-UCCGC- -5'
17206 3' -58.5 NC_004333.2 + 1131 0.7 0.263235
Target:  5'- -cGGUGcCGUGCUgcGCGCGACGuuGCa -3'
miRNA:   3'- uaUCGCaGCACGA--CGCGCUGCucCGc -5'
17206 3' -58.5 NC_004333.2 + 4176 0.71 0.250121
Target:  5'- --cGCGcUCGUGCUGCaGCGGCGuGuGCu -3'
miRNA:   3'- uauCGC-AGCACGACG-CGCUGCuC-CGc -5'
17206 3' -58.5 NC_004333.2 + 47012 0.71 0.237551
Target:  5'- --cGCGcCGccuugGCUGCGCG-CGAGGCu -3'
miRNA:   3'- uauCGCaGCa----CGACGCGCuGCUCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.