miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17206 5' -56.8 NC_004333.2 + 47490 0.67 0.485708
Target:  5'- cGCGCUgaacgAGgcGCCGGccgGCGCGACc-- -3'
miRNA:   3'- aCGCGG-----UCaaCGGCCa--CGUGCUGuac -5'
17206 5' -56.8 NC_004333.2 + 37201 0.68 0.455228
Target:  5'- cGCGCCGG-UGCCGaGUuccGCcGCGACGc- -3'
miRNA:   3'- aCGCGGUCaACGGC-CA---CG-UGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 31214 0.68 0.455228
Target:  5'- -uUGCCGGUuggucaUGCCGGU-CGCGACGg- -3'
miRNA:   3'- acGCGGUCA------ACGGCCAcGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 30699 0.68 0.455228
Target:  5'- cGCGCC--UUGCCGcGcugcUGCACGACcUGg -3'
miRNA:   3'- aCGCGGucAACGGC-C----ACGUGCUGuAC- -5'
17206 5' -56.8 NC_004333.2 + 12402 0.68 0.445299
Target:  5'- cGCGCCAGUgucGCCGccuucggccaaGcGCugGACGUa -3'
miRNA:   3'- aCGCGGUCAa--CGGC-----------CaCGugCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 48165 0.68 0.435493
Target:  5'- cGCGcCCGGUUGCCGccugcgccucGUcggcaccgagcaGCACGACAUc -3'
miRNA:   3'- aCGC-GGUCAACGGC----------CA------------CGUGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 28147 0.68 0.432575
Target:  5'- cGCGCCgccgaGGUUGacagcgauacgcauCCGGUGCuCGACAa- -3'
miRNA:   3'- aCGCGG-----UCAAC--------------GGCCACGuGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 13879 0.68 0.424851
Target:  5'- cGCGCCgcgcgaAGUcgGCCGGcacgggcUGCGCGGCGg- -3'
miRNA:   3'- aCGCGG------UCAa-CGGCC-------ACGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 38599 0.69 0.406841
Target:  5'- aGCGCCAGcuacaGCCGG-GCGCGcCGc- -3'
miRNA:   3'- aCGCGGUCaa---CGGCCaCGUGCuGUac -5'
17206 5' -56.8 NC_004333.2 + 17517 0.69 0.388409
Target:  5'- uUGCGCCAcau-CCGGUGCccggGCGACGUu -3'
miRNA:   3'- -ACGCGGUcaacGGCCACG----UGCUGUAc -5'
17206 5' -56.8 NC_004333.2 + 25442 0.69 0.3794
Target:  5'- -aCGCCGGgcgUGCCGGU-UACGACGa- -3'
miRNA:   3'- acGCGGUCa--ACGGCCAcGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 23042 0.69 0.370534
Target:  5'- aGCGUCuGGUUGCCcGUGUAgGugGUGa -3'
miRNA:   3'- aCGCGG-UCAACGGcCACGUgCugUAC- -5'
17206 5' -56.8 NC_004333.2 + 20576 0.7 0.352378
Target:  5'- cGCGgCGGcgGCCGGcagcgguUGCGCGGCAg- -3'
miRNA:   3'- aCGCgGUCaaCGGCC-------ACGUGCUGUac -5'
17206 5' -56.8 NC_004333.2 + 11847 0.7 0.325945
Target:  5'- uUGCGCCGGUacaucgcuuccgucUGCCGGUcggccgaaacggGCGCGAgCAc- -3'
miRNA:   3'- -ACGCGGUCA--------------ACGGCCA------------CGUGCU-GUac -5'
17206 5' -56.8 NC_004333.2 + 9692 0.71 0.312512
Target:  5'- cGcCGCCGGcaGCCGGUGCGCaACcgGc -3'
miRNA:   3'- aC-GCGGUCaaCGGCCACGUGcUGuaC- -5'
17206 5' -56.8 NC_004333.2 + 31362 0.71 0.297252
Target:  5'- gGCGCaGGUgcgGCCGGUcucGC-CGGCAUGg -3'
miRNA:   3'- aCGCGgUCAa--CGGCCA---CGuGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 23486 0.71 0.297252
Target:  5'- gGCGgCGGguacgUGCCGGgcuaccaGUACGGCGUGa -3'
miRNA:   3'- aCGCgGUCa----ACGGCCa------CGUGCUGUAC- -5'
17206 5' -56.8 NC_004333.2 + 44446 0.72 0.275456
Target:  5'- gGCGCuCGGccUGCCGGUGCAaaagGACAc- -3'
miRNA:   3'- aCGCG-GUCa-ACGGCCACGUg---CUGUac -5'
17206 5' -56.8 NC_004333.2 + 38376 0.72 0.26848
Target:  5'- -uCGCCGGUcGCCGcGUGCACGgucgcGCGUGc -3'
miRNA:   3'- acGCGGUCAaCGGC-CACGUGC-----UGUAC- -5'
17206 5' -56.8 NC_004333.2 + 11708 0.72 0.261648
Target:  5'- aGCGCCGGgcggcgUGCUGGcguccUGCGCGAUGUc -3'
miRNA:   3'- aCGCGGUCa-----ACGGCC-----ACGUGCUGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.