miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17207 3' -58.7 NC_004333.2 + 2761 0.67 0.501117
Target:  5'- gCCuGUCGg--CCGcCGCCGGCgCGACGc -3'
miRNA:   3'- -GGcUAGCagaGGU-GCGGCCG-GCUGCu -5'
17207 3' -58.7 NC_004333.2 + 22705 0.67 0.501117
Target:  5'- cCUGggCGUCaucaUCCAgCGCacaGGCgCGACGAa -3'
miRNA:   3'- -GGCuaGCAG----AGGU-GCGg--CCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 20563 0.67 0.491138
Target:  5'- gCUGAUCGUCggCGCGUCGggucgcGCCGugGu -3'
miRNA:   3'- -GGCUAGCAGagGUGCGGC------CGGCugCu -5'
17207 3' -58.7 NC_004333.2 + 13980 0.67 0.491138
Target:  5'- aCGAUCGcCacggcagCCGCcgcgcagcccguGCCGGCCGACu- -3'
miRNA:   3'- gGCUAGCaGa------GGUG------------CGGCCGGCUGcu -5'
17207 3' -58.7 NC_004333.2 + 47512 0.67 0.490145
Target:  5'- gUCGAUgCGUCgaacggaUUgGCGCCGGCgagCGGCGAu -3'
miRNA:   3'- -GGCUA-GCAG-------AGgUGCGGCCG---GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 27029 0.67 0.481252
Target:  5'- gCGAUCGUCgaugaUGCGCaCGGCCuuuaccucGACGGg -3'
miRNA:   3'- gGCUAGCAGag---GUGCG-GCCGG--------CUGCU- -5'
17207 3' -58.7 NC_004333.2 + 47475 0.67 0.481252
Target:  5'- gCCGGcggCGaCUgCCgcgcugaacgagGCGCCGGCCGGCGc -3'
miRNA:   3'- -GGCUa--GCaGA-GG------------UGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 29955 0.67 0.471464
Target:  5'- cCCGAUCG-CgcaGCGCUucGCCGACGAc -3'
miRNA:   3'- -GGCUAGCaGaggUGCGGc-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 47807 0.67 0.471464
Target:  5'- gCUGAUCGUgCagCGCGCCGccuGCgGACGGc -3'
miRNA:   3'- -GGCUAGCA-GagGUGCGGC---CGgCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 2840 0.68 0.452198
Target:  5'- aCGGUCGUgaCgaaCGCGaCCGGCaCGGCGGc -3'
miRNA:   3'- gGCUAGCA--Gag-GUGC-GGCCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 43315 0.68 0.452198
Target:  5'- gCCGAUCGag-CCgACGCCGGaaaucaUGACGGc -3'
miRNA:   3'- -GGCUAGCagaGG-UGCGGCCg-----GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 47467 0.68 0.442727
Target:  5'- gCGAUUG-CUUgCGCGUCGGUCGGCGc -3'
miRNA:   3'- gGCUAGCaGAG-GUGCGGCCGGCUGCu -5'
17207 3' -58.7 NC_004333.2 + 26656 0.68 0.442727
Target:  5'- gUGAgCGUgaUCGCGCCGGCUGcCGAu -3'
miRNA:   3'- gGCUaGCAgaGGUGCGGCCGGCuGCU- -5'
17207 3' -58.7 NC_004333.2 + 25292 0.68 0.442727
Target:  5'- uUCGG-CGUCgcaaCCGgGCCGacGCCGGCGAc -3'
miRNA:   3'- -GGCUaGCAGa---GGUgCGGC--CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 13252 0.68 0.43337
Target:  5'- aCGAUCGUa-UCGCGCCcaGUCGGCGAc -3'
miRNA:   3'- gGCUAGCAgaGGUGCGGc-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 7785 0.68 0.430585
Target:  5'- aCGAUcCGUCgcugUCCGCGCCGaucaccgcuacgacGCCGugGu -3'
miRNA:   3'- gGCUA-GCAG----AGGUGCGGC--------------CGGCugCu -5'
17207 3' -58.7 NC_004333.2 + 5433 0.68 0.424128
Target:  5'- cCCGAUCGacccgaagaaUCcgggcaUCCACGgCGGCgUGACGAu -3'
miRNA:   3'- -GGCUAGC----------AG------AGGUGCgGCCG-GCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 18380 0.68 0.424128
Target:  5'- -gGAUCGUg-CgCACGCgCGuGCCGGCGAa -3'
miRNA:   3'- ggCUAGCAgaG-GUGCG-GC-CGGCUGCU- -5'
17207 3' -58.7 NC_004333.2 + 11587 0.68 0.415006
Target:  5'- gCUGAUUGUCgacguacaaaUCCugaaacGCGCCGGCCGucacuucgcgcGCGAa -3'
miRNA:   3'- -GGCUAGCAG----------AGG------UGCGGCCGGC-----------UGCU- -5'
17207 3' -58.7 NC_004333.2 + 39300 0.68 0.415006
Target:  5'- gCGGUCGagcaUUgCACGCagcuCGGCCGACGGg -3'
miRNA:   3'- gGCUAGCa---GAgGUGCG----GCCGGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.