Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17208 | 3' | -53.8 | NC_004333.2 | + | 2873 | 0.68 | 0.700135 |
Target: 5'- gCGAAC--GACGUCGCAgCggCGAGGCu -3' miRNA: 3'- gGCUUGcaCUGCGGCGU-GuaGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 26914 | 0.68 | 0.700135 |
Target: 5'- gCCGAGCGcGACGCgacaGCAC-UCGcuacGACg -3' miRNA: 3'- -GGCUUGCaCUGCGg---CGUGuAGCu---CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 46283 | 0.68 | 0.689231 |
Target: 5'- uUCGAGCGccUGGCGCUGauccgGCG-CGAGACc -3' miRNA: 3'- -GGCUUGC--ACUGCGGCg----UGUaGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 18167 | 0.69 | 0.634101 |
Target: 5'- cCCGAAUGcgGACGUgGCGCGcUCGcAGAg -3' miRNA: 3'- -GGCUUGCa-CUGCGgCGUGU-AGC-UCUg -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 34735 | 0.69 | 0.623028 |
Target: 5'- gCCGcccuuaguuGACGUGACGCCGC-CcgCGAu-- -3' miRNA: 3'- -GGC---------UUGCACUGCGGCGuGuaGCUcug -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 47475 | 0.69 | 0.634101 |
Target: 5'- gCCG-GCGgcGACuGCCGCGCugaaCGAGGCg -3' miRNA: 3'- -GGCuUGCa-CUG-CGGCGUGua--GCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 37496 | 0.69 | 0.600915 |
Target: 5'- gCCGcaguacACGUGcACGCCGCGCAaaccgCGAG-Cg -3' miRNA: 3'- -GGCu-----UGCAC-UGCGGCGUGUa----GCUCuG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 4059 | 0.69 | 0.634101 |
Target: 5'- aCGcAGCagcuaaACGCCGCcaACAUCGAGACg -3' miRNA: 3'- gGC-UUGcac---UGCGGCG--UGUAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 40746 | 0.69 | 0.634101 |
Target: 5'- cCUGAACGcGAUGCUgaucgaGCGCAUCGcgcAGACc -3' miRNA: 3'- -GGCUUGCaCUGCGG------CGUGUAGC---UCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 18481 | 0.69 | 0.623028 |
Target: 5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3' miRNA: 3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 32161 | 0.69 | 0.619707 |
Target: 5'- aCUGAACGcgccGACGCCGaucuaugcgaucguCGCGUCG-GACa -3' miRNA: 3'- -GGCUUGCa---CUGCGGC--------------GUGUAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 17500 | 0.69 | 0.611963 |
Target: 5'- cCCGGGCGacguuuUGAuCGUCaGCGCGUCGuGACc -3' miRNA: 3'- -GGCUUGC------ACU-GCGG-CGUGUAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 23824 | 0.69 | 0.600915 |
Target: 5'- -aGAACGacuCGUCGCGCGUCGAG-Cu -3' miRNA: 3'- ggCUUGCacuGCGGCGUGUAGCUCuG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 44999 | 0.69 | 0.600915 |
Target: 5'- gCCGAcuucuuCGgcGCGCgCGaCGCAUCGAGACg -3' miRNA: 3'- -GGCUu-----GCacUGCG-GC-GUGUAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 5664 | 0.69 | 0.589895 |
Target: 5'- cCUGAACGUGcGCaugcccgaugGCCGCACaAUCGAG-Cu -3' miRNA: 3'- -GGCUUGCAC-UG----------CGGCGUG-UAGCUCuG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 21008 | 0.69 | 0.634101 |
Target: 5'- cCCGuGGCGUaGcCGCCGgGCGUCGGGuuGCa -3' miRNA: 3'- -GGC-UUGCA-CuGCGGCgUGUAGCUC--UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 15721 | 0.7 | 0.546257 |
Target: 5'- -gGGACGaUGACGCCGUgcuucACGUCGAaGCc -3' miRNA: 3'- ggCUUGC-ACUGCGGCG-----UGUAGCUcUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 9239 | 0.7 | 0.546257 |
Target: 5'- gCCGAACGggGGCGCCuCGCcgCGugcGGCa -3' miRNA: 3'- -GGCUUGCa-CUGCGGcGUGuaGCu--CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 14335 | 0.7 | 0.578911 |
Target: 5'- cUCGAagGCGUGcCGCCGCugGcUCGAaagaGGCg -3' miRNA: 3'- -GGCU--UGCACuGCGGCGugU-AGCU----CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 14505 | 0.7 | 0.578911 |
Target: 5'- aCGAGCGUG-UGUgGCugAUCGAcuGGCg -3' miRNA: 3'- gGCUUGCACuGCGgCGugUAGCU--CUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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