Results 61 - 80 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17208 | 3' | -53.8 | NC_004333.2 | + | 31392 | 0.67 | 0.732398 |
Target: 5'- gCCGGcauuGCG-GGCGCCGUgcucgGCGUCGGcGCa -3' miRNA: 3'- -GGCU----UGCaCUGCGGCG-----UGUAGCUcUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 21774 | 0.67 | 0.72173 |
Target: 5'- gCGcACGUG-CGCauagaGCGCGUCGAGcuGCu -3' miRNA: 3'- gGCuUGCACuGCGg----CGUGUAGCUC--UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 13851 | 0.67 | 0.710972 |
Target: 5'- gUGGACGUGAgcaacuacaCGCCGCGCGagCGGcGCg -3' miRNA: 3'- gGCUUGCACU---------GCGGCGUGUa-GCUcUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 41764 | 0.67 | 0.710972 |
Target: 5'- cCCGAAguUGcCGCC-CGCGUCGAGcACg -3' miRNA: 3'- -GGCUUgcACuGCGGcGUGUAGCUC-UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 5260 | 0.66 | 0.773936 |
Target: 5'- gUCGAACGUGAUGCgauacgggggcgUGCuCAUC-AGGCg -3' miRNA: 3'- -GGCUUGCACUGCG------------GCGuGUAGcUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 20642 | 0.66 | 0.773936 |
Target: 5'- gCGAGCGUcgcaacGGCGCUGCGCcaguggcagGAGGCg -3' miRNA: 3'- gGCUUGCA------CUGCGGCGUGuag------CUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 39256 | 0.66 | 0.773936 |
Target: 5'- cCCGAGCGgccggcaGGCGCaCGCGCG-CGcGAUc -3' miRNA: 3'- -GGCUUGCa------CUGCG-GCGUGUaGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 15880 | 0.66 | 0.793862 |
Target: 5'- gCGAGCGaGcCGCCGUGaccgcCAUCGuAGACg -3' miRNA: 3'- gGCUUGCaCuGCGGCGU-----GUAGC-UCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 37119 | 0.66 | 0.803574 |
Target: 5'- gCgGGGCGUGcucgaagcgcucACGCCGCACGaCGcGAUc -3' miRNA: 3'- -GgCUUGCAC------------UGCGGCGUGUaGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 22537 | 0.66 | 0.803574 |
Target: 5'- -aGAACGUGAUGuuGCcgaGCGaCGAGcGCg -3' miRNA: 3'- ggCUUGCACUGCggCG---UGUaGCUC-UG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 19248 | 0.66 | 0.773936 |
Target: 5'- gCUGGACGUGACGaacaUGCACGcaucCGGcGACc -3' miRNA: 3'- -GGCUUGCACUGCg---GCGUGUa---GCU-CUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 38972 | 0.66 | 0.767839 |
Target: 5'- cCCGuguuCGUGAaccgGCCgaucgacccgaacugGCAUGUCGAGGCg -3' miRNA: 3'- -GGCuu--GCACUg---CGG---------------CGUGUAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 19557 | 0.66 | 0.763745 |
Target: 5'- gCCGGucgcACGgucGGCGCgGCACAagGGGAa -3' miRNA: 3'- -GGCU----UGCa--CUGCGgCGUGUagCUCUg -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 700 | 0.66 | 0.763745 |
Target: 5'- gCGAuCGUGcCGCCGC-CcgCGAG-Cg -3' miRNA: 3'- gGCUuGCACuGCGGCGuGuaGCUCuG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 33286 | 0.66 | 0.762718 |
Target: 5'- gCCGAGCGcGcGCGuuGCgucggccGCAUCGAGcCa -3' miRNA: 3'- -GGCUUGCaC-UGCggCG-------UGUAGCUCuG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 3029 | 0.66 | 0.773936 |
Target: 5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3' miRNA: 3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 45796 | 0.66 | 0.773936 |
Target: 5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3' miRNA: 3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 13605 | 0.66 | 0.773936 |
Target: 5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3' miRNA: 3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 1321 | 0.66 | 0.803574 |
Target: 5'- -gGAgcACGUcAUGCCGUugAUCGaAGGCa -3' miRNA: 3'- ggCU--UGCAcUGCGGCGugUAGC-UCUG- -5' |
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17208 | 3' | -53.8 | NC_004333.2 | + | 22301 | 0.66 | 0.803574 |
Target: 5'- aCGAACGUccaauCGUCGgACAgaccCGAGGCg -3' miRNA: 3'- gGCUUGCAcu---GCGGCgUGUa---GCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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