miRNA display CGI


Results 41 - 60 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 22301 0.66 0.803574
Target:  5'- aCGAACGUccaauCGUCGgACAgaccCGAGGCg -3'
miRNA:   3'- gGCUUGCAcu---GCGGCgUGUa---GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 22537 0.66 0.803574
Target:  5'- -aGAACGUGAUGuuGCcgaGCGaCGAGcGCg -3'
miRNA:   3'- ggCUUGCACUGCggCG---UGUaGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 23008 0.7 0.554913
Target:  5'- gCCGAACGguucgaccuauACGCUGCACAacUCGAGcgGCa -3'
miRNA:   3'- -GGCUUGCac---------UGCGGCGUGU--AGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 23824 0.69 0.600915
Target:  5'- -aGAACGacuCGUCGCGCGUCGAG-Cu -3'
miRNA:   3'- ggCUUGCacuGCGGCGUGUAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 25275 0.73 0.368497
Target:  5'- gCGGGCGUcGACGUcgaguCGCGCAgcgaguUCGAGACg -3'
miRNA:   3'- gGCUUGCA-CUGCG-----GCGUGU------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 26055 0.68 0.656232
Target:  5'- gCCGGAUuugccaGUGGCGCCGCAg--CGGcGGCg -3'
miRNA:   3'- -GGCUUG------CACUGCGGCGUguaGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 26813 0.7 0.578911
Target:  5'- cCUGAACGgGGCGCCGaCGCAaUGGGuCa -3'
miRNA:   3'- -GGCUUGCaCUGCGGC-GUGUaGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 26914 0.68 0.700135
Target:  5'- gCCGAGCGcGACGCgacaGCAC-UCGcuacGACg -3'
miRNA:   3'- -GGCUUGCaCUGCGg---CGUGuAGCu---CUG- -5'
17208 3' -53.8 NC_004333.2 + 29994 0.77 0.233378
Target:  5'- gCCGAGCGcgagcaccaugcGGCGCCGCuCGUCGGGAUc -3'
miRNA:   3'- -GGCUUGCa-----------CUGCGGCGuGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 31001 0.75 0.303215
Target:  5'- gCCGGACGUGAuCGUCGCgaugaaggcaaGCGUCGAcGCg -3'
miRNA:   3'- -GGCUUGCACU-GCGGCG-----------UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 31314 0.67 0.72173
Target:  5'- aCCGAGac-GGCGCUGCGCcgCGcGGCc -3'
miRNA:   3'- -GGCUUgcaCUGCGGCGUGuaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 31392 0.67 0.732398
Target:  5'- gCCGGcauuGCG-GGCGCCGUgcucgGCGUCGGcGCa -3'
miRNA:   3'- -GGCU----UGCaCUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 32123 0.68 0.700135
Target:  5'- uCCGAcGCGauaaGCGCCaGCACGUCGAacgcGGCg -3'
miRNA:   3'- -GGCU-UGCac--UGCGG-CGUGUAGCU----CUG- -5'
17208 3' -53.8 NC_004333.2 + 32161 0.69 0.619707
Target:  5'- aCUGAACGcgccGACGCCGaucuaugcgaucguCGCGUCG-GACa -3'
miRNA:   3'- -GGCUUGCa---CUGCGGC--------------GUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 33286 0.66 0.762718
Target:  5'- gCCGAGCGcGcGCGuuGCgucggccGCAUCGAGcCa -3'
miRNA:   3'- -GGCUUGCaC-UGCggCG-------UGUAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 34735 0.69 0.623028
Target:  5'- gCCGcccuuaguuGACGUGACGCCGC-CcgCGAu-- -3'
miRNA:   3'- -GGC---------UUGCACUGCGGCGuGuaGCUcug -5'
17208 3' -53.8 NC_004333.2 + 36336 0.73 0.386255
Target:  5'- aCGucGCGUGuCGCUGCAUGUCGuGGCu -3'
miRNA:   3'- gGCu-UGCACuGCGGCGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 37119 0.66 0.803574
Target:  5'- gCgGGGCGUGcucgaagcgcucACGCCGCACGaCGcGAUc -3'
miRNA:   3'- -GgCUUGCAC------------UGCGGCGUGUaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 37257 0.72 0.427254
Target:  5'- aCCGGcgcgcgucgugagcgGCGUGuCGCCGCGCugCGGGAUg -3'
miRNA:   3'- -GGCU---------------UGCACuGCGGCGUGuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 37496 0.69 0.600915
Target:  5'- gCCGcaguacACGUGcACGCCGCGCAaaccgCGAG-Cg -3'
miRNA:   3'- -GGCu-----UGCAC-UGCGGCGUGUa----GCUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.