miRNA display CGI


Results 61 - 80 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 38394 0.78 0.199497
Target:  5'- gCCG-GCGUGACGCCGgcCACGgucaagacggcgaUCGAGACg -3'
miRNA:   3'- -GGCuUGCACUGCGGC--GUGU-------------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 38972 0.66 0.767839
Target:  5'- cCCGuguuCGUGAaccgGCCgaucgacccgaacugGCAUGUCGAGGCg -3'
miRNA:   3'- -GGCuu--GCACUg---CGG---------------CGUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 39076 0.68 0.645173
Target:  5'- gCGAcuCGUG-CGCCGUGCGUCGGcACu -3'
miRNA:   3'- gGCUu-GCACuGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 39256 0.66 0.773936
Target:  5'- cCCGAGCGgccggcaGGCGCaCGCGCG-CGcGAUc -3'
miRNA:   3'- -GGCUUGCa------CUGCG-GCGUGUaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 40097 0.7 0.578911
Target:  5'- uCCGcgcCGUGGCGCCGCGCGaguucCGuGAUc -3'
miRNA:   3'- -GGCuu-GCACUGCGGCGUGUa----GCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 40746 0.69 0.634101
Target:  5'- cCUGAACGcGAUGCUgaucgaGCGCAUCGcgcAGACc -3'
miRNA:   3'- -GGCUUGCaCUGCGG------CGUGUAGC---UCUG- -5'
17208 3' -53.8 NC_004333.2 + 41331 0.67 0.74716
Target:  5'- aUGGACGUGACGCgCgaguguguacgugugGCGC-UCGAGcACg -3'
miRNA:   3'- gGCUUGCACUGCG-G---------------CGUGuAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 41764 0.67 0.710972
Target:  5'- cCCGAAguUGcCGCC-CGCGUCGAGcACg -3'
miRNA:   3'- -GGCUUgcACuGCGGcGUGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 42081 0.67 0.742964
Target:  5'- aCGAggauaGCGUcgUGCUGCGCGaCGAGGCg -3'
miRNA:   3'- gGCU-----UGCAcuGCGGCGUGUaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 43067 1.12 0.000851
Target:  5'- gCCGAACGUGACGCCGCACAUCGAGACg -3'
miRNA:   3'- -GGCUUGCACUGCGGCGUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 43483 0.67 0.742964
Target:  5'- cCCGAGCGUc-UGCCuGCGCGggcggcugCGGGACc -3'
miRNA:   3'- -GGCUUGCAcuGCGG-CGUGUa-------GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 44245 0.67 0.752377
Target:  5'- gCgGAACGUGaaacaguaggcgcGCGUCGUcggauCGUCGAGAUa -3'
miRNA:   3'- -GgCUUGCAC-------------UGCGGCGu----GUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 44999 0.69 0.600915
Target:  5'- gCCGAcuucuuCGgcGCGCgCGaCGCAUCGAGACg -3'
miRNA:   3'- -GGCUu-----GCacUGCG-GC-GUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 45519 0.68 0.656232
Target:  5'- gCGGGCGgGGCGCCcCGCAUuCGAG-Cg -3'
miRNA:   3'- gGCUUGCaCUGCGGcGUGUA-GCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 45796 0.66 0.773936
Target:  5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3'
miRNA:   3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 46283 0.68 0.689231
Target:  5'- uUCGAGCGccUGGCGCUGauccgGCG-CGAGACc -3'
miRNA:   3'- -GGCUUGC--ACUGCGGCg----UGUaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 46602 0.67 0.742964
Target:  5'- aCGAguACuUGACGCCcCgAUAUCGGGGCg -3'
miRNA:   3'- gGCU--UGcACUGCGGcG-UGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 47181 0.72 0.452659
Target:  5'- -aGAACGcGcUGCCGCGCAgcaCGAGGCa -3'
miRNA:   3'- ggCUUGCaCuGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 47475 0.69 0.634101
Target:  5'- gCCG-GCGgcGACuGCCGCGCugaaCGAGGCg -3'
miRNA:   3'- -GGCuUGCa-CUG-CGGCGUGua--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 47690 0.7 0.578911
Target:  5'- aUCGAACGUGcCGCC-CAUcUCGGcGACg -3'
miRNA:   3'- -GGCUUGCACuGCGGcGUGuAGCU-CUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.