miRNA display CGI


Results 61 - 80 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 18481 0.69 0.623028
Target:  5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3'
miRNA:   3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 32161 0.69 0.619707
Target:  5'- aCUGAACGcgccGACGCCGaucuaugcgaucguCGCGUCG-GACa -3'
miRNA:   3'- -GGCUUGCa---CUGCGGC--------------GUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 31001 0.75 0.303215
Target:  5'- gCCGGACGUGAuCGUCGCgaugaaggcaaGCGUCGAcGCg -3'
miRNA:   3'- -GGCUUGCACU-GCGGCG-----------UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 8699 0.74 0.334693
Target:  5'- gCCGAGCucGACGUCGCGCAUCGGc-- -3'
miRNA:   3'- -GGCUUGcaCUGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 25275 0.73 0.368497
Target:  5'- gCGGGCGUcGACGUcgaguCGCGCAgcgaguUCGAGACg -3'
miRNA:   3'- gGCUUGCA-CUGCG-----GCGUGU------AGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 36336 0.73 0.386255
Target:  5'- aCGucGCGUGuCGCUGCAUGUCGuGGCu -3'
miRNA:   3'- gGCu-UGCACuGCGGCGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 21165 0.72 0.423421
Target:  5'- aCCGAcggcguuCGUGAaGCCGCACGUCGcauaguuGGCg -3'
miRNA:   3'- -GGCUu------GCACUgCGGCGUGUAGCu------CUG- -5'
17208 3' -53.8 NC_004333.2 + 37257 0.72 0.427254
Target:  5'- aCCGGcgcgcgucgugagcgGCGUGuCGCCGCGCugCGGGAUg -3'
miRNA:   3'- -GGCU---------------UGCACuGCGGCGUGuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 8992 0.71 0.482965
Target:  5'- gCGAACGaagccGCGUCGCGCAUCGAcGCc -3'
miRNA:   3'- gGCUUGCac---UGCGGCGUGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 23008 0.7 0.554913
Target:  5'- gCCGAACGguucgaccuauACGCUGCACAacUCGAGcgGCa -3'
miRNA:   3'- -GGCUUGCac---------UGCGGCGUGU--AGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 40097 0.7 0.578911
Target:  5'- uCCGcgcCGUGGCGCCGCGCGaguucCGuGAUc -3'
miRNA:   3'- -GGCuu-GCACUGCGGCGUGUa----GCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 14505 0.7 0.578911
Target:  5'- aCGAGCGUG-UGUgGCugAUCGAcuGGCg -3'
miRNA:   3'- gGCUUGCACuGCGgCGugUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 14335 0.7 0.578911
Target:  5'- cUCGAagGCGUGcCGCCGCugGcUCGAaagaGGCg -3'
miRNA:   3'- -GGCU--UGCACuGCGGCGugU-AGCU----CUG- -5'
17208 3' -53.8 NC_004333.2 + 47690 0.7 0.578911
Target:  5'- aUCGAACGUGcCGCC-CAUcUCGGcGACg -3'
miRNA:   3'- -GGCUUGCACuGCGGcGUGuAGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 5664 0.69 0.589895
Target:  5'- cCUGAACGUGcGCaugcccgaugGCCGCACaAUCGAG-Cu -3'
miRNA:   3'- -GGCUUGCAC-UG----------CGGCGUG-UAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 44999 0.69 0.600915
Target:  5'- gCCGAcuucuuCGgcGCGCgCGaCGCAUCGAGACg -3'
miRNA:   3'- -GGCUu-----GCacUGCG-GC-GUGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 23824 0.69 0.600915
Target:  5'- -aGAACGacuCGUCGCGCGUCGAG-Cu -3'
miRNA:   3'- ggCUUGCacuGCGGCGUGUAGCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 37496 0.69 0.600915
Target:  5'- gCCGcaguacACGUGcACGCCGCGCAaaccgCGAG-Cg -3'
miRNA:   3'- -GGCu-----UGCAC-UGCGGCGUGUa----GCUCuG- -5'
17208 3' -53.8 NC_004333.2 + 17500 0.69 0.611963
Target:  5'- cCCGGGCGacguuuUGAuCGUCaGCGCGUCGuGACc -3'
miRNA:   3'- -GGCUUGC------ACU-GCGG-CGUGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 1321 0.66 0.803574
Target:  5'- -gGAgcACGUcAUGCCGUugAUCGaAGGCa -3'
miRNA:   3'- ggCU--UGCAcUGCGGCGugUAGC-UCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.