miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 18481 0.69 0.623028
Target:  5'- gCCGAucGCGaGGCGuuGCGCuUCG-GACg -3'
miRNA:   3'- -GGCU--UGCaCUGCggCGUGuAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 4059 0.69 0.634101
Target:  5'- aCGcAGCagcuaaACGCCGCcaACAUCGAGACg -3'
miRNA:   3'- gGC-UUGcac---UGCGGCG--UGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 17113 0.67 0.736637
Target:  5'- gCGAGCaUGACGCCauuggccugcagcguGCACGagUCGAGcGCg -3'
miRNA:   3'- gGCUUGcACUGCGG---------------CGUGU--AGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 43483 0.67 0.742964
Target:  5'- cCCGAGCGUc-UGCCuGCGCGggcggcugCGGGACc -3'
miRNA:   3'- -GGCUUGCAcuGCGG-CGUGUa-------GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 44245 0.67 0.752377
Target:  5'- gCgGAACGUGaaacaguaggcgcGCGUCGUcggauCGUCGAGAUa -3'
miRNA:   3'- -GgCUUGCAC-------------UGCGGCGu----GUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 9337 0.67 0.753417
Target:  5'- gCCGAAUccGcagaaggcuAUGCCGCACGcggCGAGGCg -3'
miRNA:   3'- -GGCUUGcaC---------UGCGGCGUGUa--GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 332 0.67 0.753417
Target:  5'- cUCGGcgGCGUGACGaC-CACAUCGAacGGCa -3'
miRNA:   3'- -GGCU--UGCACUGCgGcGUGUAGCU--CUG- -5'
17208 3' -53.8 NC_004333.2 + 13605 0.66 0.773936
Target:  5'- gCCGccGGCGgcaACGCCGCgagcACGUCG-GACg -3'
miRNA:   3'- -GGC--UUGCac-UGCGGCG----UGUAGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 45796 0.66 0.773936
Target:  5'- aUCGGcACGUucGCGCCGgGC-UCGAGAUg -3'
miRNA:   3'- -GGCU-UGCAc-UGCGGCgUGuAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 3029 0.66 0.773936
Target:  5'- aCGGGCGUcACGCuCGCGCAgcugCaGGGCu -3'
miRNA:   3'- gGCUUGCAcUGCG-GCGUGUa---GcUCUG- -5'
17208 3' -53.8 NC_004333.2 + 31392 0.67 0.732398
Target:  5'- gCCGGcauuGCG-GGCGCCGUgcucgGCGUCGGcGCa -3'
miRNA:   3'- -GGCU----UGCaCUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 31314 0.67 0.72173
Target:  5'- aCCGAGac-GGCGCUGCGCcgCGcGGCc -3'
miRNA:   3'- -GGCUUgcaCUGCGGCGUGuaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 21008 0.69 0.634101
Target:  5'- cCCGuGGCGUaGcCGCCGgGCGUCGGGuuGCa -3'
miRNA:   3'- -GGC-UUGCA-CuGCGGCgUGUAGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 18167 0.69 0.634101
Target:  5'- cCCGAAUGcgGACGUgGCGCGcUCGcAGAg -3'
miRNA:   3'- -GGCUUGCa-CUGCGgCGUGU-AGC-UCUg -5'
17208 3' -53.8 NC_004333.2 + 9427 0.68 0.656232
Target:  5'- -aGAAgGcccGACGCCGCGCGcCGAcGACg -3'
miRNA:   3'- ggCUUgCa--CUGCGGCGUGUaGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 46283 0.68 0.689231
Target:  5'- uUCGAGCGccUGGCGCUGauccgGCG-CGAGACc -3'
miRNA:   3'- -GGCUUGC--ACUGCGGCg----UGUaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 26914 0.68 0.700135
Target:  5'- gCCGAGCGcGACGCgacaGCAC-UCGcuacGACg -3'
miRNA:   3'- -GGCUUGCaCUGCGg---CGUGuAGCu---CUG- -5'
17208 3' -53.8 NC_004333.2 + 41764 0.67 0.710972
Target:  5'- cCCGAAguUGcCGCC-CGCGUCGAGcACg -3'
miRNA:   3'- -GGCUUgcACuGCGGcGUGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 13851 0.67 0.710972
Target:  5'- gUGGACGUGAgcaacuacaCGCCGCGCGagCGGcGCg -3'
miRNA:   3'- gGCUUGCACU---------GCGGCGUGUa-GCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 21774 0.67 0.72173
Target:  5'- gCGcACGUG-CGCauagaGCGCGUCGAGcuGCu -3'
miRNA:   3'- gGCuUGCACuGCGg----CGUGUAGCUC--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.