miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17208 3' -53.8 NC_004333.2 + 46602 0.67 0.742964
Target:  5'- aCGAguACuUGACGCCcCgAUAUCGGGGCg -3'
miRNA:   3'- gGCU--UGcACUGCGGcG-UGUAGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 11959 0.67 0.742964
Target:  5'- gUCGAGCGccuUGCaCGCGCGUCGAcGAUc -3'
miRNA:   3'- -GGCUUGCacuGCG-GCGUGUAGCU-CUG- -5'
17208 3' -53.8 NC_004333.2 + 19780 0.67 0.742964
Target:  5'- aCGcACGgGAucgUGCCGCGCGUUGAGuGCg -3'
miRNA:   3'- gGCuUGCaCU---GCGGCGUGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 42081 0.67 0.742964
Target:  5'- aCGAggauaGCGUcgUGCUGCGCGaCGAGGCg -3'
miRNA:   3'- gGCU-----UGCAcuGCGGCGUGUaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 43483 0.67 0.742964
Target:  5'- cCCGAGCGUc-UGCCuGCGCGggcggcugCGGGACc -3'
miRNA:   3'- -GGCUUGCAcuGCGG-CGUGUa-------GCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 17113 0.67 0.736637
Target:  5'- gCGAGCaUGACGCCauuggccugcagcguGCACGagUCGAGcGCg -3'
miRNA:   3'- gGCUUGcACUGCGG---------------CGUGU--AGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 31392 0.67 0.732398
Target:  5'- gCCGGcauuGCG-GGCGCCGUgcucgGCGUCGGcGCa -3'
miRNA:   3'- -GGCU----UGCaCUGCGGCG-----UGUAGCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 21774 0.67 0.72173
Target:  5'- gCGcACGUG-CGCauagaGCGCGUCGAGcuGCu -3'
miRNA:   3'- gGCuUGCACuGCGg----CGUGUAGCUC--UG- -5'
17208 3' -53.8 NC_004333.2 + 31314 0.67 0.72173
Target:  5'- aCCGAGac-GGCGCUGCGCcgCGcGGCc -3'
miRNA:   3'- -GGCUUgcaCUGCGGCGUGuaGCuCUG- -5'
17208 3' -53.8 NC_004333.2 + 2966 0.67 0.710972
Target:  5'- gCGAGCGUGACGCC-CGuCAaCGgaaugccuAGACg -3'
miRNA:   3'- gGCUUGCACUGCGGcGU-GUaGC--------UCUG- -5'
17208 3' -53.8 NC_004333.2 + 13851 0.67 0.710972
Target:  5'- gUGGACGUGAgcaacuacaCGCCGCGCGagCGGcGCg -3'
miRNA:   3'- gGCUUGCACU---------GCGGCGUGUa-GCUcUG- -5'
17208 3' -53.8 NC_004333.2 + 41764 0.67 0.710972
Target:  5'- cCCGAAguUGcCGCC-CGCGUCGAGcACg -3'
miRNA:   3'- -GGCUUgcACuGCGGcGUGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 32123 0.68 0.700135
Target:  5'- uCCGAcGCGauaaGCGCCaGCACGUCGAacgcGGCg -3'
miRNA:   3'- -GGCU-UGCac--UGCGG-CGUGUAGCU----CUG- -5'
17208 3' -53.8 NC_004333.2 + 26914 0.68 0.700135
Target:  5'- gCCGAGCGcGACGCgacaGCAC-UCGcuacGACg -3'
miRNA:   3'- -GGCUUGCaCUGCGg---CGUGuAGCu---CUG- -5'
17208 3' -53.8 NC_004333.2 + 2873 0.68 0.700135
Target:  5'- gCGAAC--GACGUCGCAgCggCGAGGCu -3'
miRNA:   3'- gGCUUGcaCUGCGGCGU-GuaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 46283 0.68 0.689231
Target:  5'- uUCGAGCGccUGGCGCUGauccgGCG-CGAGACc -3'
miRNA:   3'- -GGCUUGC--ACUGCGGCg----UGUaGCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 21022 0.68 0.678272
Target:  5'- aCGGGCGacgaaGugGCCGCGCAgugcugcuccUgGGGACu -3'
miRNA:   3'- gGCUUGCa----CugCGGCGUGU----------AgCUCUG- -5'
17208 3' -53.8 NC_004333.2 + 20246 0.68 0.678272
Target:  5'- aCUGGccuACGaucGCGCCGCACAUCGAc-- -3'
miRNA:   3'- -GGCU---UGCac-UGCGGCGUGUAGCUcug -5'
17208 3' -53.8 NC_004333.2 + 13841 0.68 0.666166
Target:  5'- uUCGAcgACG-GGCGCCGCgucgagcGCAUUGAGcGCg -3'
miRNA:   3'- -GGCU--UGCaCUGCGGCG-------UGUAGCUC-UG- -5'
17208 3' -53.8 NC_004333.2 + 45519 0.68 0.656232
Target:  5'- gCGGGCGgGGCGCCcCGCAUuCGAG-Cg -3'
miRNA:   3'- gGCUUGCaCUGCGGcGUGUA-GCUCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.