miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17209 3' -53.2 NC_004333.2 + 12823 0.66 0.798226
Target:  5'- gUCUGGUAcGAcuACGuGCGCGcgUaccaGCGUa -3'
miRNA:   3'- -AGACCGU-CU--UGCuCGCGCuaAg---UGCA- -5'
17209 3' -53.2 NC_004333.2 + 44391 0.66 0.798226
Target:  5'- --cGGCGGcGCGuGCGCGGUacaACGg -3'
miRNA:   3'- agaCCGUCuUGCuCGCGCUAag-UGCa -5'
17209 3' -53.2 NC_004333.2 + 41712 0.66 0.798226
Target:  5'- uUCgGGCGGcACG-GCGCGAUcaACGa -3'
miRNA:   3'- -AGaCCGUCuUGCuCGCGCUAagUGCa -5'
17209 3' -53.2 NC_004333.2 + 30621 0.66 0.798226
Target:  5'- gCUGGCAG-ACGAuCGCGAaggCGCu- -3'
miRNA:   3'- aGACCGUCuUGCUcGCGCUaa-GUGca -5'
17209 3' -53.2 NC_004333.2 + 19860 0.66 0.767698
Target:  5'- uUCUGGC---GCGAGUGCGAccgaUUACGc -3'
miRNA:   3'- -AGACCGucuUGCUCGCGCUa---AGUGCa -5'
17209 3' -53.2 NC_004333.2 + 11878 0.66 0.767698
Target:  5'- --cGGCcGaAACGGGCGCGAgcaccuugucgUCGCGg -3'
miRNA:   3'- agaCCGuC-UUGCUCGCGCUa----------AGUGCa -5'
17209 3' -53.2 NC_004333.2 + 44508 0.67 0.735849
Target:  5'- --cGGCAGGcCGAGCGCcucgCACGc -3'
miRNA:   3'- agaCCGUCUuGCUCGCGcuaaGUGCa -5'
17209 3' -53.2 NC_004333.2 + 11311 0.67 0.734768
Target:  5'- gUCUGGCAGcacuCGAGCGCcggcaagGAgcCGCGc -3'
miRNA:   3'- -AGACCGUCuu--GCUCGCG-------CUaaGUGCa -5'
17209 3' -53.2 NC_004333.2 + 2328 0.67 0.724996
Target:  5'- aCUGGCGGAauGCGAGCaccguGCGGccgUUGCGc -3'
miRNA:   3'- aGACCGUCU--UGCUCG-----CGCUa--AGUGCa -5'
17209 3' -53.2 NC_004333.2 + 17546 0.67 0.724996
Target:  5'- --cGaGCAGcgUGAGCGCGGcggccUUCGCGUu -3'
miRNA:   3'- agaC-CGUCuuGCUCGCGCU-----AAGUGCA- -5'
17209 3' -53.2 NC_004333.2 + 47883 0.67 0.711845
Target:  5'- gCUGGCAGccuucgcauucgcacGGCGGGgcucuacuacguggcUGCGAUUCugGUg -3'
miRNA:   3'- aGACCGUC---------------UUGCUC---------------GCGCUAAGugCA- -5'
17209 3' -53.2 NC_004333.2 + 44247 0.68 0.669515
Target:  5'- --aGGCGGAACGugaaacaguaGGCGCGcgUCGuCGg -3'
miRNA:   3'- agaCCGUCUUGC----------UCGCGCuaAGU-GCa -5'
17209 3' -53.2 NC_004333.2 + 42916 0.69 0.613097
Target:  5'- aCUGGCAGAuGCG-GCGCGGgcUUCuuCGg -3'
miRNA:   3'- aGACCGUCU-UGCuCGCGCU--AAGu-GCa -5'
17209 3' -53.2 NC_004333.2 + 37977 0.7 0.568206
Target:  5'- gUUUGGCGucGCcgaGAGCGCGAaUCGCGa -3'
miRNA:   3'- -AGACCGUcuUG---CUCGCGCUaAGUGCa -5'
17209 3' -53.2 NC_004333.2 + 41631 0.7 0.568206
Target:  5'- cUCUGGCGGcagauuguCGGGCGCGGgcUGCGg -3'
miRNA:   3'- -AGACCGUCuu------GCUCGCGCUaaGUGCa -5'
17209 3' -53.2 NC_004333.2 + 18120 0.71 0.460831
Target:  5'- aCUGcGCAGcAGCGggcAGCGCGAUcagCGCGUa -3'
miRNA:   3'- aGAC-CGUC-UUGC---UCGCGCUAa--GUGCA- -5'
17209 3' -53.2 NC_004333.2 + 28128 0.72 0.450663
Target:  5'- aUCUGGCAGGACGuGCuuacgcCGAU-CACGa -3'
miRNA:   3'- -AGACCGUCUUGCuCGc-----GCUAaGUGCa -5'
17209 3' -53.2 NC_004333.2 + 32193 0.72 0.430703
Target:  5'- --aGGUucaGGAcgACGAGCGCGAUgagCACGUc -3'
miRNA:   3'- agaCCG---UCU--UGCUCGCGCUAa--GUGCA- -5'
17209 3' -53.2 NC_004333.2 + 43314 0.72 0.411272
Target:  5'- aCUGGCAGAugcggcGCGGGCauGCGAacgCACGg -3'
miRNA:   3'- aGACCGUCU------UGCUCG--CGCUaa-GUGCa -5'
17209 3' -53.2 NC_004333.2 + 20198 0.74 0.322735
Target:  5'- --cGGCAGuAAUGGGCGCGGcUCGCGc -3'
miRNA:   3'- agaCCGUC-UUGCUCGCGCUaAGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.