miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17209 5' -54.3 NC_004333.2 + 45687 0.66 0.731539
Target:  5'- cGGGCGCGCGAUCaGCUAccacaacgcacgCCUGCAu -3'
miRNA:   3'- -CUUGCGCGUUAG-CGAUacca--------GGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 45260 0.66 0.730456
Target:  5'- aAGCGCGCGuggCGCcuUGG-CUCGCGa -3'
miRNA:   3'- cUUGCGCGUua-GCGauACCaGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 27724 0.66 0.730456
Target:  5'- gGAAuUGCGCGAUCGCggcgcgaaucUGGUCggCCGCc -3'
miRNA:   3'- -CUU-GCGCGUUAGCGau--------ACCAG--GGCGu -5'
17209 5' -54.3 NC_004333.2 + 28473 0.66 0.719577
Target:  5'- -cACGuUGCGAUUGCggcgguuauUGGuUCCCGCAc -3'
miRNA:   3'- cuUGC-GCGUUAGCGau-------ACC-AGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 25859 0.66 0.696449
Target:  5'- -uGCGCGCGugauaagAUCGCgcgcAUGaccacgaccaacGUCCCGCAa -3'
miRNA:   3'- cuUGCGCGU-------UAGCGa---UAC------------CAGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 39279 0.66 0.686443
Target:  5'- -cGCGCGCGAUCGCa--GGUUggCUGCu -3'
miRNA:   3'- cuUGCGCGUUAGCGauaCCAG--GGCGu -5'
17209 5' -54.3 NC_004333.2 + 30499 0.67 0.657317
Target:  5'- uGGCGCgagGCAGUCGCUAcggcgcgcgaauucGGUCCgGCGc -3'
miRNA:   3'- cUUGCG---CGUUAGCGAUa-------------CCAGGgCGU- -5'
17209 5' -54.3 NC_004333.2 + 20572 0.67 0.652816
Target:  5'- cGGCGCGUcgGGUCGCgccGUGGUguuUCUGCAg -3'
miRNA:   3'- cUUGCGCG--UUAGCGa--UACCA---GGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 12296 0.67 0.652816
Target:  5'- cGGCGCGC-AUUGCg--GcGUCCUGCGc -3'
miRNA:   3'- cUUGCGCGuUAGCGauaC-CAGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 38614 0.67 0.619008
Target:  5'- cGGGCGCGC---CGCUgcccGUGGUgCCCGUu -3'
miRNA:   3'- -CUUGCGCGuuaGCGA----UACCA-GGGCGu -5'
17209 5' -54.3 NC_004333.2 + 45063 0.67 0.617881
Target:  5'- cAGCGCGCcgugguaGAUCG-UAUGGUgCUGCAg -3'
miRNA:   3'- cUUGCGCG-------UUAGCgAUACCAgGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 47571 0.68 0.596511
Target:  5'- cGAugGUGCGAaaUCG--GUGGaCCCGCAg -3'
miRNA:   3'- -CUugCGCGUU--AGCgaUACCaGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 16990 0.68 0.558597
Target:  5'- cGAACGCGCAAcUCGCggcauacgccGUCgCCGCGc -3'
miRNA:   3'- -CUUGCGCGUU-AGCGauac------CAG-GGCGU- -5'
17209 5' -54.3 NC_004333.2 + 30195 0.69 0.551971
Target:  5'- aGGCGCGCAgggcaucuuccaGUUGCgcgGGUCgCGCAu -3'
miRNA:   3'- cUUGCGCGU------------UAGCGauaCCAGgGCGU- -5'
17209 5' -54.3 NC_004333.2 + 2397 0.69 0.551971
Target:  5'- cGGCGCcgGCGGUCGCc-UGGUCgCCGUAc -3'
miRNA:   3'- cUUGCG--CGUUAGCGauACCAG-GGCGU- -5'
17209 5' -54.3 NC_004333.2 + 33479 0.71 0.436244
Target:  5'- cGGCGCGCAGUCGCUGcg---CCGCAg -3'
miRNA:   3'- cUUGCGCGUUAGCGAUaccagGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 40847 0.72 0.387499
Target:  5'- aGGCGCGCGccuucugGUCGCcggcgAUGGUCgCGCGa -3'
miRNA:   3'- cUUGCGCGU-------UAGCGa----UACCAGgGCGU- -5'
17209 5' -54.3 NC_004333.2 + 11890 0.72 0.379276
Target:  5'- gGAGCGCGCcGUCGCgcugAUGG--CCGCGu -3'
miRNA:   3'- -CUUGCGCGuUAGCGa---UACCagGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 37218 0.73 0.303663
Target:  5'- --cCGcCGCGA-CGCUGUGG-CCCGCAc -3'
miRNA:   3'- cuuGC-GCGUUaGCGAUACCaGGGCGU- -5'
17209 5' -54.3 NC_004333.2 + 43384 1.09 0.001038
Target:  5'- gGAACGCGCAAUCGCUAUGGUCCCGCAg -3'
miRNA:   3'- -CUUGCGCGUUAGCGAUACCAGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.