miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 3' -61.4 NC_004333.2 + 19274 0.68 0.24922
Target:  5'- cCGGCgACCUGGUgcuGCUCGCGaGCAa-GCAc -3'
miRNA:   3'- -GUCG-UGGGCCA---CGAGCGC-CGUgaCGU- -5'
17210 3' -61.4 NC_004333.2 + 39255 0.69 0.219262
Target:  5'- -uGCugCCGGUGCa-GCGcGCGCaGCAc -3'
miRNA:   3'- guCGugGGCCACGagCGC-CGUGaCGU- -5'
17210 3' -61.4 NC_004333.2 + 18194 0.69 0.219262
Target:  5'- -uGCGCUCGucGUGCgCGCGGCAUcGCAa -3'
miRNA:   3'- guCGUGGGC--CACGaGCGCCGUGaCGU- -5'
17210 3' -61.4 NC_004333.2 + 18604 0.69 0.202801
Target:  5'- -cGCACCCGGguUGC-CGcCGGCugcgaaggccGCUGCAg -3'
miRNA:   3'- guCGUGGGCC--ACGaGC-GCCG----------UGACGU- -5'
17210 3' -61.4 NC_004333.2 + 36078 0.69 0.202801
Target:  5'- gAGCugGCCC-GUGa-CGCGGCGCUGCGc -3'
miRNA:   3'- gUCG--UGGGcCACgaGCGCCGUGACGU- -5'
17210 3' -61.4 NC_004333.2 + 13972 0.71 0.168524
Target:  5'- gCGGCGgCCGGUGCgCGCGa-GCUGCGc -3'
miRNA:   3'- -GUCGUgGGCCACGaGCGCcgUGACGU- -5'
17210 3' -61.4 NC_004333.2 + 17630 0.71 0.155488
Target:  5'- -cGCGCCCGGUGC-CGUGGCcgacACguucGCGa -3'
miRNA:   3'- guCGUGGGCCACGaGCGCCG----UGa---CGU- -5'
17210 3' -61.4 NC_004333.2 + 8653 0.72 0.12856
Target:  5'- gCGGCGCCCGGcuUGCUCGUGaCGgUGCc -3'
miRNA:   3'- -GUCGUGGGCC--ACGAGCGCcGUgACGu -5'
17210 3' -61.4 NC_004333.2 + 30069 0.73 0.115173
Target:  5'- gCGGCGCCgcaUGGUGCUCGCgcucGGCGCcggugGCAg -3'
miRNA:   3'- -GUCGUGG---GCCACGAGCG----CCGUGa----CGU- -5'
17210 3' -61.4 NC_004333.2 + 15366 0.73 0.105999
Target:  5'- aAGCGCCCGGUGCUgaugcugacCGCGccgccgcaGCACgGCAa -3'
miRNA:   3'- gUCGUGGGCCACGA---------GCGC--------CGUGaCGU- -5'
17210 3' -61.4 NC_004333.2 + 16656 0.73 0.103097
Target:  5'- aCAGCacuucgaccuGCCCGGUGCUgcaccgCGCGGUgcggaagcaccGCUGCAa -3'
miRNA:   3'- -GUCG----------UGGGCCACGA------GCGCCG-----------UGACGU- -5'
17210 3' -61.4 NC_004333.2 + 25953 0.74 0.09222
Target:  5'- gCGGCGCuuGGcGCUCGCGcaccaaGCGCUGCu -3'
miRNA:   3'- -GUCGUGggCCaCGAGCGC------CGUGACGu -5'
17210 3' -61.4 NC_004333.2 + 24523 0.75 0.080152
Target:  5'- aCAGCaacaGCCCGGU-CUUGCuGGCGCUGCu -3'
miRNA:   3'- -GUCG----UGGGCCAcGAGCG-CCGUGACGu -5'
17210 3' -61.4 NC_004333.2 + 46990 0.8 0.035036
Target:  5'- aGGCuuCgCGGcGCUCGCGGCGCUGCAg -3'
miRNA:   3'- gUCGu-GgGCCaCGAGCGCCGUGACGU- -5'
17210 3' -61.4 NC_004333.2 + 43865 1.07 0.000236
Target:  5'- gCAGCACCCGGUGCUCGCGGCACUGCAa -3'
miRNA:   3'- -GUCGUGGGCCACGAGCGCCGUGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.