miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17210 5' -56 NC_004333.2 + 29991 0.66 0.620582
Target:  5'- gGCGCcgaGCGCGAgcaCCAugcGGCGCCGCu-- -3'
miRNA:   3'- gCGUGa--CGCGCU---GGU---UUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 15402 0.66 0.620582
Target:  5'- uGCACaa-GCGAaaCAAACGCCGCGa- -3'
miRNA:   3'- gCGUGacgCGCUg-GUUUGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 2496 0.66 0.620582
Target:  5'- uCGaCGCUGCcucgaGAUCGGGCGCgACGUAc -3'
miRNA:   3'- -GC-GUGACGcg---CUGGUUUGCGgUGCAU- -5'
17210 5' -56 NC_004333.2 + 30690 0.66 0.620582
Target:  5'- cCGCGCUGCugcaCGACCuGGCGUC-CGg- -3'
miRNA:   3'- -GCGUGACGc---GCUGGuUUGCGGuGCau -5'
17210 5' -56 NC_004333.2 + 3673 0.66 0.609464
Target:  5'- gCGCccgACUGgGCGAauaCGAuCGCCGCGa- -3'
miRNA:   3'- -GCG---UGACgCGCUg--GUUuGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 8692 0.66 0.608354
Target:  5'- aGCACgGCGaacgugcCGACCGuGACGCCGCu-- -3'
miRNA:   3'- gCGUGaCGC-------GCUGGU-UUGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 24813 0.66 0.598368
Target:  5'- gGCAgCUGCGCGACCugcACGUUgaaGUAg -3'
miRNA:   3'- gCGU-GACGCGCUGGuu-UGCGGug-CAU- -5'
17210 5' -56 NC_004333.2 + 13937 0.66 0.598368
Target:  5'- uCGCGCgGCGCGGCgCGcucaaugcgcucGACGCgGCGc- -3'
miRNA:   3'- -GCGUGaCGCGCUG-GU------------UUGCGgUGCau -5'
17210 5' -56 NC_004333.2 + 20641 0.66 0.598368
Target:  5'- -cCACgGCGCGACCcgacGCGCCgACGa- -3'
miRNA:   3'- gcGUGaCGCGCUGGuu--UGCGG-UGCau -5'
17210 5' -56 NC_004333.2 + 45662 0.66 0.598368
Target:  5'- gCGCGCUGCGCaugcaccuACCGAGCggGCgCGCGa- -3'
miRNA:   3'- -GCGUGACGCGc-------UGGUUUG--CG-GUGCau -5'
17210 5' -56 NC_004333.2 + 26464 0.66 0.598368
Target:  5'- cCGCGCUGCa--GCCAAGCGCuauCACGa- -3'
miRNA:   3'- -GCGUGACGcgcUGGUUUGCG---GUGCau -5'
17210 5' -56 NC_004333.2 + 10754 0.66 0.5873
Target:  5'- uCGUACcGCGCGGCCcGGCGCaacCGa- -3'
miRNA:   3'- -GCGUGaCGCGCUGGuUUGCGgu-GCau -5'
17210 5' -56 NC_004333.2 + 25422 0.66 0.5873
Target:  5'- gCGUGCcgGCgGCGGCCGucACGCCggGCGUGc -3'
miRNA:   3'- -GCGUGa-CG-CGCUGGUu-UGCGG--UGCAU- -5'
17210 5' -56 NC_004333.2 + 19722 0.66 0.5873
Target:  5'- gGCGCUGgugGCGugCAAgacgGCGCCGCu-- -3'
miRNA:   3'- gCGUGACg--CGCugGUU----UGCGGUGcau -5'
17210 5' -56 NC_004333.2 + 6341 0.66 0.5873
Target:  5'- cCGCACcGCGCGAUUuuacgauGCGCCG-GUAu -3'
miRNA:   3'- -GCGUGaCGCGCUGGuu-----UGCGGUgCAU- -5'
17210 5' -56 NC_004333.2 + 37229 0.66 0.5873
Target:  5'- cCGCGCUGCGgGauGCCGcACGUgauCGCGUc -3'
miRNA:   3'- -GCGUGACGCgC--UGGUuUGCG---GUGCAu -5'
17210 5' -56 NC_004333.2 + 13902 0.66 0.583987
Target:  5'- aCGgGCUGCGCGGCgGcugccguggcgaucGugGCCGCu-- -3'
miRNA:   3'- -GCgUGACGCGCUGgU--------------UugCGGUGcau -5'
17210 5' -56 NC_004333.2 + 27816 0.67 0.57627
Target:  5'- aCGgGCUcgGCGgcCGACCAGauucGCGCCGCGa- -3'
miRNA:   3'- -GCgUGA--CGC--GCUGGUU----UGCGGUGCau -5'
17210 5' -56 NC_004333.2 + 13659 0.67 0.57627
Target:  5'- gGCAgCUGCGCGAgCAGcACGa-GCGUAg -3'
miRNA:   3'- gCGU-GACGCGCUgGUU-UGCggUGCAU- -5'
17210 5' -56 NC_004333.2 + 41431 0.67 0.57627
Target:  5'- gCGguCggGCGCGugCucGAGCGCCACa-- -3'
miRNA:   3'- -GCguGa-CGCGCugG--UUUGCGGUGcau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.