Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17211 | 3' | -47.5 | NC_004333.2 | + | 29355 | 0.7 | 0.858094 |
Target: 5'- uGCGcUGuCGCAcgcGCACUucaAGCGGCUCGu -3' miRNA: 3'- gUGUaACuGUGU---UGUGA---UUGCCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 44014 | 1.11 | 0.004081 |
Target: 5'- aCACAUUGACACAACACUAACGGCUCGa -3' miRNA: 3'- -GUGUAACUGUGUUGUGAUUGCCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 12279 | 0.66 | 0.97223 |
Target: 5'- aACGU--ACACGGCACcGGCGGCgCGc -3' miRNA: 3'- gUGUAacUGUGUUGUGaUUGCCGaGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 37693 | 0.66 | 0.97223 |
Target: 5'- -----cGGCcCGGCGCgUGGCGGCUCa -3' miRNA: 3'- guguaaCUGuGUUGUG-AUUGCCGAGc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 20955 | 0.68 | 0.948099 |
Target: 5'- cCACGggccgGACGCaAACGCgcGCGGCgCGg -3' miRNA: 3'- -GUGUaa---CUGUG-UUGUGauUGCCGaGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 11698 | 0.69 | 0.925977 |
Target: 5'- -cCGUcGACGCAGCGCcgGGCGGCg-- -3' miRNA: 3'- guGUAaCUGUGUUGUGa-UUGCCGagc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 46812 | 0.73 | 0.724379 |
Target: 5'- aUACcgUG-CGCAACACgAACGuGCUCGg -3' miRNA: 3'- -GUGuaACuGUGUUGUGaUUGC-CGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 19496 | 0.66 | 0.982966 |
Target: 5'- -----cGGCGCuggcGCGCUGGCGGCgcUCGu -3' miRNA: 3'- guguaaCUGUGu---UGUGAUUGCCG--AGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 47456 | 0.67 | 0.96533 |
Target: 5'- aCGCAUcGACuaGCAACGCgccGGCGGCg-- -3' miRNA: 3'- -GUGUAaCUG--UGUUGUGa--UUGCCGagc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 13354 | 0.69 | 0.906084 |
Target: 5'- gCACGguguacgGGCGCGGCACgAGCGGCg-- -3' miRNA: 3'- -GUGUaa-----CUGUGUUGUGaUUGCCGagc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 13814 | 0.7 | 0.875255 |
Target: 5'- aCGCGcgaGACGCAGCgACggcGACGGUUCGa -3' miRNA: 3'- -GUGUaa-CUGUGUUG-UGa--UUGCCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 17675 | 0.7 | 0.883409 |
Target: 5'- --uGUUGACACGACACagGACaaGGCUUa -3' miRNA: 3'- gugUAACUGUGUUGUGa-UUG--CCGAGc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 5264 | 0.66 | 0.978081 |
Target: 5'- aACG-UGAUGCGAUACgggGGCGuGCUCa -3' miRNA: 3'- gUGUaACUGUGUUGUGa--UUGC-CGAGc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 35385 | 0.66 | 0.980638 |
Target: 5'- ----aUGGCACGaguGCAgUAACGGCggCGg -3' miRNA: 3'- guguaACUGUGU---UGUgAUUGCCGa-GC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 5224 | 0.67 | 0.968916 |
Target: 5'- uGCGcUGcucgACAACACgGGCGGCUCGc -3' miRNA: 3'- gUGUaACug--UGUUGUGaUUGCCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 31846 | 0.7 | 0.890497 |
Target: 5'- gCGCAUgucGCACGACACgcgAGCguacaagGGCUCGa -3' miRNA: 3'- -GUGUAac-UGUGUUGUGa--UUG-------CCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 29353 | 0.7 | 0.891269 |
Target: 5'- uCGCGaugGACGCGAuCAa-AGCGGCUCGg -3' miRNA: 3'- -GUGUaa-CUGUGUU-GUgaUUGCCGAGC- -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 44347 | 0.69 | 0.913028 |
Target: 5'- gCGCAUUGuGCGCAACA--AACGGCg-- -3' miRNA: 3'- -GUGUAAC-UGUGUUGUgaUUGCCGagc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 7468 | 0.69 | 0.913028 |
Target: 5'- gGCAagGACACGGCGaccuGCGGCUUu -3' miRNA: 3'- gUGUaaCUGUGUUGUgau-UGCCGAGc -5' |
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17211 | 3' | -47.5 | NC_004333.2 | + | 6792 | 0.67 | 0.968916 |
Target: 5'- --aAUUGAgCACGuuGCACgcAUGGCUCGu -3' miRNA: 3'- gugUAACU-GUGU--UGUGauUGCCGAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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