miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17211 3' -47.5 NC_004333.2 + 13354 0.69 0.906084
Target:  5'- gCACGguguacgGGCGCGGCACgAGCGGCg-- -3'
miRNA:   3'- -GUGUaa-----CUGUGUUGUGaUUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 29353 0.7 0.891269
Target:  5'- uCGCGaugGACGCGAuCAa-AGCGGCUCGg -3'
miRNA:   3'- -GUGUaa-CUGUGUU-GUgaUUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 31846 0.7 0.890497
Target:  5'- gCGCAUgucGCACGACACgcgAGCguacaagGGCUCGa -3'
miRNA:   3'- -GUGUAac-UGUGUUGUGa--UUG-------CCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 17675 0.7 0.883409
Target:  5'- --uGUUGACACGACACagGACaaGGCUUa -3'
miRNA:   3'- gugUAACUGUGUUGUGa-UUG--CCGAGc -5'
17211 3' -47.5 NC_004333.2 + 13814 0.7 0.875255
Target:  5'- aCGCGcgaGACGCAGCgACggcGACGGUUCGa -3'
miRNA:   3'- -GUGUaa-CUGUGUUG-UGa--UUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 29355 0.7 0.858094
Target:  5'- uGCGcUGuCGCAcgcGCACUucaAGCGGCUCGu -3'
miRNA:   3'- gUGUaACuGUGU---UGUGA---UUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 38309 0.71 0.839856
Target:  5'- uCACGUUGACgaACGGCGCggcGCGcuuGCUCGa -3'
miRNA:   3'- -GUGUAACUG--UGUUGUGau-UGC---CGAGC- -5'
17211 3' -47.5 NC_004333.2 + 33360 0.71 0.839856
Target:  5'- uGCGgccGACGCAACGC--GCGcGCUCGg -3'
miRNA:   3'- gUGUaa-CUGUGUUGUGauUGC-CGAGC- -5'
17211 3' -47.5 NC_004333.2 + 23110 0.71 0.820622
Target:  5'- cUACAcgGGCAaccaGACGCUGACGGCa-- -3'
miRNA:   3'- -GUGUaaCUGUg---UUGUGAUUGCCGagc -5'
17211 3' -47.5 NC_004333.2 + 20030 0.73 0.746857
Target:  5'- gCGCAgucgGGCAaAGCACUcgacGGCGGCUCGc -3'
miRNA:   3'- -GUGUaa--CUGUgUUGUGA----UUGCCGAGC- -5'
17211 3' -47.5 NC_004333.2 + 46812 0.73 0.724379
Target:  5'- aUACcgUG-CGCAACACgAACGuGCUCGg -3'
miRNA:   3'- -GUGuaACuGUGUUGUGaUUGC-CGAGC- -5'
17211 3' -47.5 NC_004333.2 + 44014 1.11 0.004081
Target:  5'- aCACAUUGACACAACACUAACGGCUCGa -3'
miRNA:   3'- -GUGUAACUGUGUUGUGAUUGCCGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.