miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17211 5' -55 NC_004333.2 + 47221 0.65 0.679285
Target:  5'- -aCGGGCgCGCUACUUUcgaGCGgauugagcaucgcaGCACAg -3'
miRNA:   3'- uaGCCCG-GCGAUGAGAaa-CGC--------------UGUGU- -5'
17211 5' -55 NC_004333.2 + 11223 0.66 0.660197
Target:  5'- uUCGGG-CGCgGCUCcUUGcCGGCGCu -3'
miRNA:   3'- uAGCCCgGCGaUGAGaAAC-GCUGUGu -5'
17211 5' -55 NC_004333.2 + 41185 0.66 0.648929
Target:  5'- cGUCGGGCCGCaACUUUaacCGACuCGu -3'
miRNA:   3'- -UAGCCCGGCGaUGAGAaacGCUGuGU- -5'
17211 5' -55 NC_004333.2 + 41429 0.66 0.648929
Target:  5'- gGUCGGG-CGCgUGCUCga-GCGcCACAc -3'
miRNA:   3'- -UAGCCCgGCG-AUGAGaaaCGCuGUGU- -5'
17211 5' -55 NC_004333.2 + 45219 0.67 0.603801
Target:  5'- uAUCGGGCCGac-UUCgg-GCGACgACAg -3'
miRNA:   3'- -UAGCCCGGCgauGAGaaaCGCUG-UGU- -5'
17211 5' -55 NC_004333.2 + 28457 0.67 0.603801
Target:  5'- uGUCGGGCCGCcaguUACgcgcgccacagUCgcaacGCGGCACGc -3'
miRNA:   3'- -UAGCCCGGCG----AUG-----------AGaaa--CGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 20166 0.67 0.603801
Target:  5'- cUC-GGCCGCcgGCUCgg-GCGcACACAa -3'
miRNA:   3'- uAGcCCGGCGa-UGAGaaaCGC-UGUGU- -5'
17211 5' -55 NC_004333.2 + 39777 0.67 0.592557
Target:  5'- -cCGaGGUCGCUugUCgucaGUGGCGCAg -3'
miRNA:   3'- uaGC-CCGGCGAugAGaaa-CGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 32347 0.67 0.592557
Target:  5'- -cCGGGUCGCUGCcCgauagcgUGCGcaGCACGa -3'
miRNA:   3'- uaGCCCGGCGAUGaGaa-----ACGC--UGUGU- -5'
17211 5' -55 NC_004333.2 + 27873 0.68 0.548026
Target:  5'- uUCGuGGUCGaCUACUCg--GCgGACACGa -3'
miRNA:   3'- uAGC-CCGGC-GAUGAGaaaCG-CUGUGU- -5'
17211 5' -55 NC_004333.2 + 44371 0.68 0.537046
Target:  5'- aAUCGgacaGGUgCGCUGCUCg--GCGGCGCGu -3'
miRNA:   3'- -UAGC----CCG-GCGAUGAGaaaCGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 29184 0.68 0.515326
Target:  5'- gGUCGGGCCGCUGCaCgaacccGCG-CAUg -3'
miRNA:   3'- -UAGCCCGGCGAUGaGaaa---CGCuGUGu -5'
17211 5' -55 NC_004333.2 + 13928 0.68 0.504599
Target:  5'- gAUCGuGGCCGCUGC-CgccaGCGugGCc -3'
miRNA:   3'- -UAGC-CCGGCGAUGaGaaa-CGCugUGu -5'
17211 5' -55 NC_004333.2 + 41700 0.69 0.49397
Target:  5'- -gCGGGCgGCaACUUcggGCGGCACGg -3'
miRNA:   3'- uaGCCCGgCGaUGAGaaaCGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 37891 0.7 0.442481
Target:  5'- uUCGGcCUGCUcgcgauucgcGCUCUcgGCGACGCAa -3'
miRNA:   3'- uAGCCcGGCGA----------UGAGAaaCGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 16530 0.7 0.403551
Target:  5'- cUCGGGCCGCgag-Cg--GUGGCGCAa -3'
miRNA:   3'- uAGCCCGGCGaugaGaaaCGCUGUGU- -5'
17211 5' -55 NC_004333.2 + 40760 0.71 0.375814
Target:  5'- gAUCGGGuuGgUGUUCUUUGCGGuCGCGa -3'
miRNA:   3'- -UAGCCCggCgAUGAGAAACGCU-GUGU- -5'
17211 5' -55 NC_004333.2 + 21987 0.73 0.293018
Target:  5'- -gCGGGCCGUU-UUCUUUGCGucgGCGCGa -3'
miRNA:   3'- uaGCCCGGCGAuGAGAAACGC---UGUGU- -5'
17211 5' -55 NC_004333.2 + 7509 0.73 0.271123
Target:  5'- cGUCGGGCCGuCUcgugcaGCUCUggGCGcCGCGc -3'
miRNA:   3'- -UAGCCCGGC-GA------UGAGAaaCGCuGUGU- -5'
17211 5' -55 NC_004333.2 + 44048 1.07 0.001081
Target:  5'- aAUCGGGCCGCUACUCUUUGCGACACAa -3'
miRNA:   3'- -UAGCCCGGCGAUGAGAAACGCUGUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.