miRNA display CGI


Results 21 - 32 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17212 5' -60.9 NC_004333.2 + 36388 0.68 0.253
Target:  5'- gGCGauGCGACGCcCGGCGAcuacucGGGCGg -3'
miRNA:   3'- aUGCggCGCUGCGaGCCGCU------CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 9996 0.69 0.23438
Target:  5'- cUGCGCgGCGACcuGCUCGuGUG-GGACGg -3'
miRNA:   3'- -AUGCGgCGCUG--CGAGC-CGCuCCUGUa -5'
17212 5' -60.9 NC_004333.2 + 6808 0.69 0.216926
Target:  5'- gGCGCCGUGGCGCUCGaauUGAGcACGUu -3'
miRNA:   3'- aUGCGGCGCUGCGAGCc--GCUCcUGUA- -5'
17212 5' -60.9 NC_004333.2 + 17200 0.7 0.195394
Target:  5'- aUGCGCUGC--UGCUCGGCGGuGACGUg -3'
miRNA:   3'- -AUGCGGCGcuGCGAGCCGCUcCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 23726 0.7 0.190311
Target:  5'- gAgGCCgGCGGCGUUCcgccucaaGGCGAGGACu- -3'
miRNA:   3'- aUgCGG-CGCUGCGAG--------CCGCUCCUGua -5'
17212 5' -60.9 NC_004333.2 + 30067 0.7 0.185345
Target:  5'- gGCGCCGCauggugcucGCGCUCGGCGccGGuGGCAg -3'
miRNA:   3'- aUGCGGCGc--------UGCGAGCCGC--UC-CUGUa -5'
17212 5' -60.9 NC_004333.2 + 346 0.71 0.180494
Target:  5'- -uCGCCGUGACcguGCUCGGCGGcGuGACGa -3'
miRNA:   3'- auGCGGCGCUG---CGAGCCGCU-C-CUGUa -5'
17212 5' -60.9 NC_004333.2 + 24153 0.71 0.162197
Target:  5'- aUGCGCU-CGAUGUUCGGCGAucgGGGCAa -3'
miRNA:   3'- -AUGCGGcGCUGCGAGCCGCU---CCUGUa -5'
17212 5' -60.9 NC_004333.2 + 36337 0.71 0.159601
Target:  5'- gACGUCGCgugucgcugcaugucGugGCUCGGCGAGGuCu- -3'
miRNA:   3'- aUGCGGCG---------------CugCGAGCCGCUCCuGua -5'
17212 5' -60.9 NC_004333.2 + 28885 0.72 0.153689
Target:  5'- -gUGCCGCGcgaucGCGCUCGGCGcAGGcCGg -3'
miRNA:   3'- auGCGGCGC-----UGCGAGCCGC-UCCuGUa -5'
17212 5' -60.9 NC_004333.2 + 31136 0.74 0.107629
Target:  5'- gGCGCuCGCGuCGUUCGGCGugaauauccagcAGGACGUg -3'
miRNA:   3'- aUGCG-GCGCuGCGAGCCGC------------UCCUGUA- -5'
17212 5' -60.9 NC_004333.2 + 44809 1.04 0.000481
Target:  5'- aUACGCCGCGACGCUCGGCGAGGACAUg -3'
miRNA:   3'- -AUGCGGCGCUGCGAGCCGCUCCUGUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.