miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 14322 0.67 0.720893
Target:  5'- cGCGGCACCGUucgccgccucuuCGAUgUAgacgcgcgaCACGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-----------GCUAgAUg--------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11229 0.67 0.734016
Target:  5'- cGCGGCuccuuGCCGgcgcuCGAgugCUGCCagACGGCc -3'
miRNA:   3'- aCGUCG-----UGGUau---GCUa--GAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11705 0.67 0.755529
Target:  5'- cGCAGCGCCGgGCGGcgUGCU--GGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUagAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 20660 0.67 0.76609
Target:  5'- aGCcGCGCC-UGCaGAaacACCACGGCg -3'
miRNA:   3'- aCGuCGUGGuAUG-CUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30070 0.67 0.76609
Target:  5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5936 0.67 0.756591
Target:  5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3'
miRNA:   3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 19290 0.67 0.755529
Target:  5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3'
miRNA:   3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5'
17213 3' -52.7 NC_004333.2 + 22742 0.67 0.755529
Target:  5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3'
miRNA:   3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 41709 0.67 0.755529
Target:  5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3'
miRNA:   3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5'
17213 3' -52.7 NC_004333.2 + 21090 0.67 0.744834
Target:  5'- cGCGGCcacuucgucGCCcgugACGG-CUGCCACGcGCu -3'
miRNA:   3'- aCGUCG---------UGGua--UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 17572 0.67 0.744834
Target:  5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3'
miRNA:   3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 10643 0.67 0.754465
Target:  5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3'
miRNA:   3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 19546 0.67 0.755529
Target:  5'- aGCugaugGGCGCCGgucgcACGGUCgg-CGCGGCa -3'
miRNA:   3'- aCG-----UCGUGGUa----UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 27367 0.67 0.755529
Target:  5'- gUGCGGUAgCCGUG-GAagUGCC-CGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAUgCUagAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 18209 0.67 0.76609
Target:  5'- cGCGGCAUCGcaaUACGcgccggaaAUCUacgacGCCgACGGCa -3'
miRNA:   3'- aCGUCGUGGU---AUGC--------UAGA-----UGG-UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31883 0.68 0.700963
Target:  5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3'
miRNA:   3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5'
17213 3' -52.7 NC_004333.2 + 4638 0.68 0.700963
Target:  5'- --gAGCGCCAUcGCGAUCaugGCgACGGg -3'
miRNA:   3'- acgUCGUGGUA-UGCUAGa--UGgUGCCg -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5'
17213 3' -52.7 NC_004333.2 + 38388 0.68 0.667267
Target:  5'- gGguGCGCCGgcgugACGccg-GCCACGGUc -3'
miRNA:   3'- aCguCGUGGUa----UGCuagaUGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.