miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 16738 0.68 0.68642
Target:  5'- gGCAaaACCGUugaggaauggaacgACGAUCUGCgccgaCACGGCa -3'
miRNA:   3'- aCGUcgUGGUA--------------UGCUAGAUG-----GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22374 0.68 0.699848
Target:  5'- cGCAcGCGCCGaggaugGCcGUCUGCCaggucgaggcuucGCGGCg -3'
miRNA:   3'- aCGU-CGUGGUa-----UGcUAGAUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4638 0.68 0.700963
Target:  5'- --gAGCGCCAUcGCGAUCaugGCgACGGg -3'
miRNA:   3'- acgUCGUGGUA-UGCUAGa--UGgUGCCg -5'
17213 3' -52.7 NC_004333.2 + 45094 0.68 0.667267
Target:  5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3'
miRNA:   3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 14812 0.68 0.689785
Target:  5'- cGCcGCACgCGcGCGAgcaggucauUCgcagACCACGGCg -3'
miRNA:   3'- aCGuCGUG-GUaUGCU---------AGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31883 0.68 0.700963
Target:  5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3'
miRNA:   3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5'
17213 3' -52.7 NC_004333.2 + 23486 0.68 0.667267
Target:  5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3'
miRNA:   3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23975 0.68 0.667267
Target:  5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6672 0.68 0.667267
Target:  5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2502 0.68 0.667267
Target:  5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3'
miRNA:   3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 39350 0.68 0.678549
Target:  5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3'
miRNA:   3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 22971 0.68 0.689785
Target:  5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3'
miRNA:   3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 23042 0.68 0.689785
Target:  5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3'
miRNA:   3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 44491 0.68 0.689785
Target:  5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3'
miRNA:   3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 20573 0.68 0.689785
Target:  5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 39073 0.68 0.700963
Target:  5'- cUGCAGCGCCu--CGAcaUGCCAguucgggucgauCGGCc -3'
miRNA:   3'- -ACGUCGUGGuauGCUagAUGGU------------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5'
17213 3' -52.7 NC_004333.2 + 3678 0.68 0.700963
Target:  5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3'
miRNA:   3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5'
17213 3' -52.7 NC_004333.2 + 31083 0.68 0.712068
Target:  5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3'
miRNA:   3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.