Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 44491 | 0.68 | 0.689785 |
Target: 5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3' miRNA: 3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22971 | 0.68 | 0.689785 |
Target: 5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3' miRNA: 3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2502 | 0.68 | 0.667267 |
Target: 5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3' miRNA: 3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13929 | 0.69 | 0.644607 |
Target: 5'- cGCGGCGCgcucaAUGCGcUCga-CGCGGCg -3' miRNA: 3'- aCGUCGUGg----UAUGCuAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22128 | 0.69 | 0.644607 |
Target: 5'- cGCuacGCGCCGUgcACGAUCUGuCCGCccGCg -3' miRNA: 3'- aCGu--CGUGGUA--UGCUAGAU-GGUGc-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20467 | 0.69 | 0.644607 |
Target: 5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3' miRNA: 3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 10874 | 0.69 | 0.655948 |
Target: 5'- cGCGGU-CUGUGCG-UCUGCCAaauaguCGGCa -3' miRNA: 3'- aCGUCGuGGUAUGCuAGAUGGU------GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 35819 | 0.69 | 0.633253 |
Target: 5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3' miRNA: 3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 28739 | 0.69 | 0.640066 |
Target: 5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3' miRNA: 3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 47822 | 0.69 | 0.655948 |
Target: 5'- gUGCuuGGCACagucggccggggUGUACGAg--GCCACGGCg -3' miRNA: 3'- -ACG--UCGUG------------GUAUGCUagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2284 | 0.69 | 0.621898 |
Target: 5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3' miRNA: 3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 8429 | 0.69 | 0.633253 |
Target: 5'- cGguGcCGCCGacguUGAUCUGCC-CGGCc -3' miRNA: 3'- aCguC-GUGGUau--GCUAGAUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 9167 | 0.69 | 0.655948 |
Target: 5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3' miRNA: 3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 3610 | 0.69 | 0.641201 |
Target: 5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3' miRNA: 3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 43864 | 0.69 | 0.633253 |
Target: 5'- cGCAGCACC---CGGU--GCuCGCGGCa -3' miRNA: 3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 26049 | 0.69 | 0.633253 |
Target: 5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3' miRNA: 3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 6412 | 0.7 | 0.543235 |
Target: 5'- cGCAucguaaaaucGCGCgGUGCGGUCguccUCACGGCu -3' miRNA: 3'- aCGU----------CGUGgUAUGCUAGau--GGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36384 | 0.7 | 0.554319 |
Target: 5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3' miRNA: 3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 29891 | 0.7 | 0.576677 |
Target: 5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3' miRNA: 3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 15985 | 0.7 | 0.599228 |
Target: 5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3' miRNA: 3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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