Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 26049 | 0.69 | 0.633253 |
Target: 5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3' miRNA: 3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 9167 | 0.69 | 0.655948 |
Target: 5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3' miRNA: 3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 8429 | 0.69 | 0.633253 |
Target: 5'- cGguGcCGCCGacguUGAUCUGCC-CGGCc -3' miRNA: 3'- aCguC-GUGGUau--GCUAGAUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2284 | 0.69 | 0.621898 |
Target: 5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3' miRNA: 3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 43864 | 0.69 | 0.633253 |
Target: 5'- cGCAGCACC---CGGU--GCuCGCGGCa -3' miRNA: 3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 8485 | 0.68 | 0.700963 |
Target: 5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3' miRNA: 3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 3678 | 0.68 | 0.700963 |
Target: 5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3' miRNA: 3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31083 | 0.68 | 0.712068 |
Target: 5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3' miRNA: 3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 28960 | 0.68 | 0.700963 |
Target: 5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3' miRNA: 3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20573 | 0.68 | 0.689785 |
Target: 5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3' miRNA: 3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 44491 | 0.68 | 0.689785 |
Target: 5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3' miRNA: 3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 6672 | 0.68 | 0.667267 |
Target: 5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3' miRNA: 3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23975 | 0.68 | 0.667267 |
Target: 5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3' miRNA: 3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23486 | 0.68 | 0.667267 |
Target: 5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3' miRNA: 3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 45094 | 0.68 | 0.667267 |
Target: 5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3' miRNA: 3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2502 | 0.68 | 0.667267 |
Target: 5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3' miRNA: 3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 39350 | 0.68 | 0.678549 |
Target: 5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3' miRNA: 3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22971 | 0.68 | 0.689785 |
Target: 5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3' miRNA: 3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23042 | 0.68 | 0.689785 |
Target: 5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3' miRNA: 3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 5496 | 0.68 | 0.667267 |
Target: 5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3' miRNA: 3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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