miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 27367 0.67 0.755529
Target:  5'- gUGCGGUAgCCGUG-GAagUGCC-CGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAUgCUagAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30070 0.67 0.76609
Target:  5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 19290 0.67 0.755529
Target:  5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3'
miRNA:   3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5'
17213 3' -52.7 NC_004333.2 + 20660 0.67 0.76609
Target:  5'- aGCcGCGCC-UGCaGAaacACCACGGCg -3'
miRNA:   3'- aCGuCGUGGuAUG-CUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 19546 0.67 0.755529
Target:  5'- aGCugaugGGCGCCGgucgcACGGUCgg-CGCGGCa -3'
miRNA:   3'- aCG-----UCGUGGUa----UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11705 0.67 0.755529
Target:  5'- cGCAGCGCCGgGCGGcgUGCU--GGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUagAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 22742 0.67 0.755529
Target:  5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3'
miRNA:   3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 41709 0.67 0.755529
Target:  5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3'
miRNA:   3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5'
17213 3' -52.7 NC_004333.2 + 10643 0.67 0.754465
Target:  5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3'
miRNA:   3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 17572 0.67 0.744834
Target:  5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3'
miRNA:   3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5936 0.67 0.756591
Target:  5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3'
miRNA:   3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 4997 0.66 0.786761
Target:  5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 46945 0.66 0.785743
Target:  5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3'
miRNA:   3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31385 0.66 0.786761
Target:  5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3'
miRNA:   3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5'
17213 3' -52.7 NC_004333.2 + 1452 0.66 0.796846
Target:  5'- cGCGGCuuCAUGCGuUCguucaagGCCGCcgccGGCa -3'
miRNA:   3'- aCGUCGugGUAUGCuAGa------UGGUG----CCG- -5'
17213 3' -52.7 NC_004333.2 + 20315 0.66 0.800829
Target:  5'- gUGCGGCGCgAUGuaggccagucgcgguCGAUCgccGCCACGaaaGCg -3'
miRNA:   3'- -ACGUCGUGgUAU---------------GCUAGa--UGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 41493 0.66 0.825954
Target:  5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3'
miRNA:   3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 28837 0.66 0.816453
Target:  5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3'
miRNA:   3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.