miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 22128 0.69 0.644607
Target:  5'- cGCuacGCGCCGUgcACGAUCUGuCCGCccGCg -3'
miRNA:   3'- aCGu--CGUGGUA--UGCUAGAU-GGUGc-CG- -5'
17213 3' -52.7 NC_004333.2 + 13929 0.69 0.644607
Target:  5'- cGCGGCGCgcucaAUGCGcUCga-CGCGGCg -3'
miRNA:   3'- aCGUCGUGg----UAUGCuAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 9167 0.69 0.655948
Target:  5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3'
miRNA:   3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 47822 0.69 0.655948
Target:  5'- gUGCuuGGCACagucggccggggUGUACGAg--GCCACGGCg -3'
miRNA:   3'- -ACG--UCGUG------------GUAUGCUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 10874 0.69 0.655948
Target:  5'- cGCGGU-CUGUGCG-UCUGCCAaauaguCGGCa -3'
miRNA:   3'- aCGUCGuGGUAUGCuAGAUGGU------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 45094 0.68 0.667267
Target:  5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3'
miRNA:   3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23486 0.68 0.667267
Target:  5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3'
miRNA:   3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23975 0.68 0.667267
Target:  5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6672 0.68 0.667267
Target:  5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5496 0.68 0.667267
Target:  5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3'
miRNA:   3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5'
17213 3' -52.7 NC_004333.2 + 2502 0.68 0.667267
Target:  5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3'
miRNA:   3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 38388 0.68 0.667267
Target:  5'- gGguGCGCCGgcgugACGccg-GCCACGGUc -3'
miRNA:   3'- aCguCGUGGUa----UGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 39350 0.68 0.678549
Target:  5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3'
miRNA:   3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 31251 0.68 0.68642
Target:  5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 16738 0.68 0.68642
Target:  5'- gGCAaaACCGUugaggaauggaacgACGAUCUGCgccgaCACGGCa -3'
miRNA:   3'- aCGUcgUGGUA--------------UGCUAGAUG-----GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23042 0.68 0.689785
Target:  5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3'
miRNA:   3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 22971 0.68 0.689785
Target:  5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3'
miRNA:   3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 44491 0.68 0.689785
Target:  5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3'
miRNA:   3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 20573 0.68 0.689785
Target:  5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 18572 0.68 0.689785
Target:  5'- cUGCAGCGuCCGU-CGGcgUGCCggcaACGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAuGCUagAUGG----UGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.