miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 14812 0.68 0.689785
Target:  5'- cGCcGCACgCGcGCGAgcaggucauUCgcagACCACGGCg -3'
miRNA:   3'- aCGuCGUG-GUaUGCU---------AGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30833 0.68 0.698733
Target:  5'- cGCcGCGCCGUauguacaGCGAUUcggugagUACCuCGGCg -3'
miRNA:   3'- aCGuCGUGGUA-------UGCUAG-------AUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22374 0.68 0.699848
Target:  5'- cGCAcGCGCCGaggaugGCcGUCUGCCaggucgaggcuucGCGGCg -3'
miRNA:   3'- aCGU-CGUGGUa-----UGcUAGAUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 46915 0.68 0.700963
Target:  5'- cUGCAGCGCC--GCGAgc-GCCGCGaaGCc -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGGUGC--CG- -5'
17213 3' -52.7 NC_004333.2 + 31883 0.68 0.700963
Target:  5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3'
miRNA:   3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5'
17213 3' -52.7 NC_004333.2 + 4638 0.68 0.700963
Target:  5'- --gAGCGCCAUcGCGAUCaugGCgACGGg -3'
miRNA:   3'- acgUCGUGGUA-UGCUAGa--UGgUGCCg -5'
17213 3' -52.7 NC_004333.2 + 3678 0.68 0.700963
Target:  5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3'
miRNA:   3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5'
17213 3' -52.7 NC_004333.2 + 39073 0.68 0.700963
Target:  5'- cUGCAGCGCCu--CGAcaUGCCAguucgggucgauCGGCc -3'
miRNA:   3'- -ACGUCGUGGuauGCUagAUGGU------------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2393 0.68 0.710961
Target:  5'- aUGaCGGCGCCG-GCGGUC-GCCuggucgccguacaGCGGCa -3'
miRNA:   3'- -AC-GUCGUGGUaUGCUAGaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31083 0.68 0.712068
Target:  5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3'
miRNA:   3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 14322 0.67 0.720893
Target:  5'- cGCGGCACCGUucgccgccucuuCGAUgUAgacgcgcgaCACGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-----------GCUAgAUg--------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 46352 0.67 0.723091
Target:  5'- cGUuauGCGCCGcUGCgGAUUUGgCGCGGCc -3'
miRNA:   3'- aCGu--CGUGGU-AUG-CUAGAUgGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11229 0.67 0.734016
Target:  5'- cGCGGCuccuuGCCGgcgcuCGAgugCUGCCagACGGCc -3'
miRNA:   3'- aCGUCG-----UGGUau---GCUa--GAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 8652 0.67 0.744834
Target:  5'- cGCGGCGCCcgGCuugCUcgugacgguGCCGuCGGCg -3'
miRNA:   3'- aCGUCGUGGuaUGcuaGA---------UGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 8870 0.67 0.744834
Target:  5'- cGCGGCugCGgcGCGGUUaGCCGC-GCa -3'
miRNA:   3'- aCGUCGugGUa-UGCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 17572 0.67 0.744834
Target:  5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3'
miRNA:   3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 21090 0.67 0.744834
Target:  5'- cGCGGCcacuucgucGCCcgugACGG-CUGCCACGcGCu -3'
miRNA:   3'- aCGUCG---------UGGua--UGCUaGAUGGUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.