Results 81 - 100 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 33045 | 0.67 | 0.744834 |
Target: 5'- cGCcGCACgugCGUaGCGGUCgGCCACGaGCg -3' miRNA: 3'- aCGuCGUG---GUA-UGCUAGaUGGUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 10643 | 0.67 | 0.754465 |
Target: 5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3' miRNA: 3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 19290 | 0.67 | 0.755529 |
Target: 5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3' miRNA: 3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 19546 | 0.67 | 0.755529 |
Target: 5'- aGCugaugGGCGCCGgucgcACGGUCgg-CGCGGCa -3' miRNA: 3'- aCG-----UCGUGGUa----UGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 27367 | 0.67 | 0.755529 |
Target: 5'- gUGCGGUAgCCGUG-GAagUGCC-CGGCg -3' miRNA: 3'- -ACGUCGU-GGUAUgCUagAUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22742 | 0.67 | 0.755529 |
Target: 5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3' miRNA: 3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 11705 | 0.67 | 0.755529 |
Target: 5'- cGCAGCGCCGgGCGGcgUGCU--GGCg -3' miRNA: 3'- aCGUCGUGGUaUGCUagAUGGugCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41709 | 0.67 | 0.755529 |
Target: 5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3' miRNA: 3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 5936 | 0.67 | 0.756591 |
Target: 5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3' miRNA: 3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20660 | 0.67 | 0.76609 |
Target: 5'- aGCcGCGCC-UGCaGAaacACCACGGCg -3' miRNA: 3'- aCGuCGUGGuAUG-CUagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 18209 | 0.67 | 0.76609 |
Target: 5'- cGCGGCAUCGcaaUACGcgccggaaAUCUacgacGCCgACGGCa -3' miRNA: 3'- aCGUCGUGGU---AUGC--------UAGA-----UGG-UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 30070 | 0.67 | 0.76609 |
Target: 5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3' miRNA: 3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36282 | 0.66 | 0.772358 |
Target: 5'- cGCGacguccuGCGCCAUGCGAUacgcGCCGCccgaguagucgccgGGCg -3' miRNA: 3'- aCGU-------CGUGGUAUGCUAga--UGGUG--------------CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 691 | 0.66 | 0.776505 |
Target: 5'- gGCAGCACCGgcccgcuguCGGgcaCUGCCuacguuacugAUGGCg -3' miRNA: 3'- aCGUCGUGGUau-------GCUa--GAUGG----------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 27598 | 0.66 | 0.776505 |
Target: 5'- cGCGGCACU-UGCGAUCga-CACGuCg -3' miRNA: 3'- aCGUCGUGGuAUGCUAGaugGUGCcG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46945 | 0.66 | 0.785743 |
Target: 5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3' miRNA: 3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 4997 | 0.66 | 0.786761 |
Target: 5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3' miRNA: 3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31385 | 0.66 | 0.786761 |
Target: 5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3' miRNA: 3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46110 | 0.66 | 0.786761 |
Target: 5'- gGCcgAGCGCgGUGCGc---GCUACGGCa -3' miRNA: 3'- aCG--UCGUGgUAUGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 1452 | 0.66 | 0.796846 |
Target: 5'- cGCGGCuuCAUGCGuUCguucaagGCCGCcgccGGCa -3' miRNA: 3'- aCGUCGugGUAUGCuAGa------UGGUG----CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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