Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 3678 | 0.68 | 0.700963 |
Target: 5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3' miRNA: 3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 39073 | 0.68 | 0.700963 |
Target: 5'- cUGCAGCGCCu--CGAcaUGCCAguucgggucgauCGGCc -3' miRNA: 3'- -ACGUCGUGGuauGCUagAUGGU------------GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46915 | 0.68 | 0.700963 |
Target: 5'- cUGCAGCGCC--GCGAgc-GCCGCGaaGCc -3' miRNA: 3'- -ACGUCGUGGuaUGCUagaUGGUGC--CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31883 | 0.68 | 0.700963 |
Target: 5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3' miRNA: 3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 8485 | 0.68 | 0.700963 |
Target: 5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3' miRNA: 3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22374 | 0.68 | 0.699848 |
Target: 5'- cGCAcGCGCCGaggaugGCcGUCUGCCaggucgaggcuucGCGGCg -3' miRNA: 3'- aCGU-CGUGGUa-----UGcUAGAUGG-------------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 30833 | 0.68 | 0.698733 |
Target: 5'- cGCcGCGCCGUauguacaGCGAUUcggugagUACCuCGGCg -3' miRNA: 3'- aCGuCGUGGUA-------UGCUAG-------AUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 18572 | 0.68 | 0.689785 |
Target: 5'- cUGCAGCGuCCGU-CGGcgUGCCggcaACGGCg -3' miRNA: 3'- -ACGUCGU-GGUAuGCUagAUGG----UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22971 | 0.68 | 0.689785 |
Target: 5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3' miRNA: 3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23042 | 0.68 | 0.689785 |
Target: 5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3' miRNA: 3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 44491 | 0.68 | 0.689785 |
Target: 5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3' miRNA: 3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 14812 | 0.68 | 0.689785 |
Target: 5'- cGCcGCACgCGcGCGAgcaggucauUCgcagACCACGGCg -3' miRNA: 3'- aCGuCGUG-GUaUGCU---------AGa---UGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20573 | 0.68 | 0.689785 |
Target: 5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3' miRNA: 3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31251 | 0.68 | 0.68642 |
Target: 5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3' miRNA: 3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 16738 | 0.68 | 0.68642 |
Target: 5'- gGCAaaACCGUugaggaauggaacgACGAUCUGCgccgaCACGGCa -3' miRNA: 3'- aCGUcgUGGUA--------------UGCUAGAUG-----GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 39350 | 0.68 | 0.678549 |
Target: 5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3' miRNA: 3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 45094 | 0.68 | 0.667267 |
Target: 5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3' miRNA: 3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23486 | 0.68 | 0.667267 |
Target: 5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3' miRNA: 3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 23975 | 0.68 | 0.667267 |
Target: 5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3' miRNA: 3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 6672 | 0.68 | 0.667267 |
Target: 5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3' miRNA: 3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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