Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 12286 | 0.66 | 0.806747 |
Target: 5'- -aCGGCACCGgcgGCGcgC-AUUGCGGCg -3' miRNA: 3'- acGUCGUGGUa--UGCuaGaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13816 | 0.66 | 0.816453 |
Target: 5'- cGCGGCGuCC-UACGcgCUcgACUucaACGGCa -3' miRNA: 3'- aCGUCGU-GGuAUGCuaGA--UGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13913 | 0.74 | 0.353306 |
Target: 5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3' miRNA: 3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13929 | 0.69 | 0.644607 |
Target: 5'- cGCGGCGCgcucaAUGCGcUCga-CGCGGCg -3' miRNA: 3'- aCGUCGUGg----UAUGCuAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 13993 | 0.81 | 0.133648 |
Target: 5'- gGCGGCAgCGgccACGAUC-GCCACGGCa -3' miRNA: 3'- aCGUCGUgGUa--UGCUAGaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 14322 | 0.67 | 0.720893 |
Target: 5'- cGCGGCACCGUucgccgccucuuCGAUgUAgacgcgcgaCACGGCg -3' miRNA: 3'- aCGUCGUGGUAu-----------GCUAgAUg--------GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 14812 | 0.68 | 0.689785 |
Target: 5'- cGCcGCACgCGcGCGAgcaggucauUCgcagACCACGGCg -3' miRNA: 3'- aCGuCGUG-GUaUGCU---------AGa---UGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 15253 | 0.74 | 0.37101 |
Target: 5'- aGCAGCGCgAaaugagcgACGAUUUGCCgugcuGCGGCg -3' miRNA: 3'- aCGUCGUGgUa-------UGCUAGAUGG-----UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 15985 | 0.7 | 0.599228 |
Target: 5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3' miRNA: 3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 16654 | 0.66 | 0.806747 |
Target: 5'- cGaCAGCACUu--CGAcCUGCC-CGGUg -3' miRNA: 3'- aC-GUCGUGGuauGCUaGAUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 16738 | 0.68 | 0.68642 |
Target: 5'- gGCAaaACCGUugaggaauggaacgACGAUCUGCgccgaCACGGCa -3' miRNA: 3'- aCGUcgUGGUA--------------UGCUAGAUG-----GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 17572 | 0.67 | 0.744834 |
Target: 5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3' miRNA: 3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 18209 | 0.67 | 0.76609 |
Target: 5'- cGCGGCAUCGcaaUACGcgccggaaAUCUacgacGCCgACGGCa -3' miRNA: 3'- aCGUCGUGGU---AUGC--------UAGA-----UGG-UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 18540 | 0.66 | 0.816453 |
Target: 5'- gGCGGCaACCcggGUGCGG-CaGCCggcGCGGCg -3' miRNA: 3'- aCGUCG-UGG---UAUGCUaGaUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 18572 | 0.68 | 0.689785 |
Target: 5'- cUGCAGCGuCCGU-CGGcgUGCCggcaACGGCg -3' miRNA: 3'- -ACGUCGU-GGUAuGCUagAUGG----UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 19290 | 0.67 | 0.755529 |
Target: 5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3' miRNA: 3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 19546 | 0.67 | 0.755529 |
Target: 5'- aGCugaugGGCGCCGgucgcACGGUCgg-CGCGGCa -3' miRNA: 3'- aCG-----UCGUGGUa----UGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20315 | 0.66 | 0.800829 |
Target: 5'- gUGCGGCGCgAUGuaggccagucgcgguCGAUCgccGCCACGaaaGCg -3' miRNA: 3'- -ACGUCGUGgUAU---------------GCUAGa--UGGUGC---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20467 | 0.69 | 0.644607 |
Target: 5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3' miRNA: 3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20573 | 0.68 | 0.689785 |
Target: 5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3' miRNA: 3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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