miRNA display CGI


Results 81 - 100 of 128 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 28739 0.69 0.640066
Target:  5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3'
miRNA:   3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 28837 0.66 0.816453
Target:  5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3'
miRNA:   3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28944 0.66 0.825013
Target:  5'- cGCcgaGGCACgCGUuguucacGCGGUCgaaCGCGGCg -3'
miRNA:   3'- aCG---UCGUG-GUA-------UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 29887 0.72 0.468106
Target:  5'- gGCgaAGCGCUGcGCGAUCggGCCGCGcGCg -3'
miRNA:   3'- aCG--UCGUGGUaUGCUAGa-UGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 29891 0.7 0.576677
Target:  5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3'
miRNA:   3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29947 0.77 0.221251
Target:  5'- cGCAGCGCUucgccgACGA-CUACCGCGcGCg -3'
miRNA:   3'- aCGUCGUGGua----UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 30000 0.66 0.816453
Target:  5'- cGCgAGCACCAUGCGGc--GCCGCu-- -3'
miRNA:   3'- aCG-UCGUGGUAUGCUagaUGGUGccg -5'
17213 3' -52.7 NC_004333.2 + 30070 0.67 0.76609
Target:  5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30292 0.71 0.496506
Target:  5'- cGCGGCGC---GCGAUCgaucaggcagcggcUAUCACGGCa -3'
miRNA:   3'- aCGUCGUGguaUGCUAG--------------AUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30425 0.66 0.816453
Target:  5'- cGC-GCGCCGUaGCGA-CUGCCuCGcGCc -3'
miRNA:   3'- aCGuCGUGGUA-UGCUaGAUGGuGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 30833 0.68 0.698733
Target:  5'- cGCcGCGCCGUauguacaGCGAUUcggugagUACCuCGGCg -3'
miRNA:   3'- aCGuCGUGGUA-------UGCUAG-------AUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31083 0.68 0.712068
Target:  5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3'
miRNA:   3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 31251 0.68 0.68642
Target:  5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 31385 0.66 0.786761
Target:  5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3'
miRNA:   3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31429 0.66 0.825954
Target:  5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3'
miRNA:   3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 31883 0.68 0.700963
Target:  5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3'
miRNA:   3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5'
17213 3' -52.7 NC_004333.2 + 33045 0.67 0.744834
Target:  5'- cGCcGCACgugCGUaGCGGUCgGCCACGaGCg -3'
miRNA:   3'- aCGuCGUG---GUA-UGCUAGaUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.