Results 101 - 120 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 34194 | 0.66 | 0.816453 |
Target: 5'- aGCAGUaACgGUuucACGAUCaaUGCgACGGCc -3' miRNA: 3'- aCGUCG-UGgUA---UGCUAG--AUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 34261 | 0.75 | 0.311707 |
Target: 5'- cGCAGUACCAguCGcAUCgUACCAgGGCa -3' miRNA: 3'- aCGUCGUGGUauGC-UAG-AUGGUgCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 35006 | 0.66 | 0.806747 |
Target: 5'- cUGCcGUACCAUugcCGGUCgcgccgaacACCAuCGGCg -3' miRNA: 3'- -ACGuCGUGGUAu--GCUAGa--------UGGU-GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 35819 | 0.69 | 0.633253 |
Target: 5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3' miRNA: 3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36282 | 0.66 | 0.772358 |
Target: 5'- cGCGacguccuGCGCCAUGCGAUacgcGCCGCccgaguagucgccgGGCg -3' miRNA: 3'- aCGU-------CGUGGUAUGCUAga--UGGUG--------------CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36384 | 0.7 | 0.554319 |
Target: 5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3' miRNA: 3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 37559 | 0.7 | 0.599228 |
Target: 5'- gGCGGC-CCAUugcuCGAUCUGCaugcguuUGGCg -3' miRNA: 3'- aCGUCGuGGUAu---GCUAGAUGgu-----GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 37673 | 0.74 | 0.353306 |
Target: 5'- aUGCAGCACCGgcgACGAuucgaacaUCaACCgugACGGCu -3' miRNA: 3'- -ACGUCGUGGUa--UGCU--------AGaUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 38230 | 0.66 | 0.816453 |
Target: 5'- aGCGGCguGCCAa--GAUCggcgGCCGgguCGGCg -3' miRNA: 3'- aCGUCG--UGGUaugCUAGa---UGGU---GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 38388 | 0.68 | 0.667267 |
Target: 5'- gGguGCGCCGgcgugACGccg-GCCACGGUc -3' miRNA: 3'- aCguCGUGGUa----UGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 39073 | 0.68 | 0.700963 |
Target: 5'- cUGCAGCGCCu--CGAcaUGCCAguucgggucgauCGGCc -3' miRNA: 3'- -ACGUCGUGGuauGCUagAUGGU------------GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 39350 | 0.68 | 0.678549 |
Target: 5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3' miRNA: 3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41493 | 0.66 | 0.825954 |
Target: 5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3' miRNA: 3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41709 | 0.67 | 0.755529 |
Target: 5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3' miRNA: 3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41716 | 0.66 | 0.816453 |
Target: 5'- gGCGGCACgGcGCGAUCaACgAggagauCGGCg -3' miRNA: 3'- aCGUCGUGgUaUGCUAGaUGgU------GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 43306 | 0.73 | 0.427636 |
Target: 5'- aUGCGGCGCgggCAUGCGA---ACgCACGGCa -3' miRNA: 3'- -ACGUCGUG---GUAUGCUagaUG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 43864 | 0.69 | 0.633253 |
Target: 5'- cGCAGCACC---CGGU--GCuCGCGGCa -3' miRNA: 3'- aCGUCGUGGuauGCUAgaUG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 44491 | 0.68 | 0.689785 |
Target: 5'- cGCAcGCACCAgccaGCGA---GCC-CGGCa -3' miRNA: 3'- aCGU-CGUGGUa---UGCUagaUGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 44983 | 1.13 | 0.000778 |
Target: 5'- cUGCAGCACCAUACGAUCUACCACGGCg -3' miRNA: 3'- -ACGUCGUGGUAUGCUAGAUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 45094 | 0.68 | 0.667267 |
Target: 5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3' miRNA: 3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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