miRNA display CGI


Results 21 - 40 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 37673 0.74 0.353306
Target:  5'- aUGCAGCACCGgcgACGAuucgaacaUCaACCgugACGGCu -3'
miRNA:   3'- -ACGUCGUGGUa--UGCU--------AGaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 37559 0.7 0.599228
Target:  5'- gGCGGC-CCAUugcuCGAUCUGCaugcguuUGGCg -3'
miRNA:   3'- aCGUCGuGGUAu---GCUAGAUGgu-----GCCG- -5'
17213 3' -52.7 NC_004333.2 + 36384 0.7 0.554319
Target:  5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3'
miRNA:   3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 36282 0.66 0.772358
Target:  5'- cGCGacguccuGCGCCAUGCGAUacgcGCCGCccgaguagucgccgGGCg -3'
miRNA:   3'- aCGU-------CGUGGUAUGCUAga--UGGUG--------------CCG- -5'
17213 3' -52.7 NC_004333.2 + 35819 0.69 0.633253
Target:  5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3'
miRNA:   3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 35006 0.66 0.806747
Target:  5'- cUGCcGUACCAUugcCGGUCgcgccgaacACCAuCGGCg -3'
miRNA:   3'- -ACGuCGUGGUAu--GCUAGa--------UGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 34261 0.75 0.311707
Target:  5'- cGCAGUACCAguCGcAUCgUACCAgGGCa -3'
miRNA:   3'- aCGUCGUGGUauGC-UAG-AUGGUgCCG- -5'
17213 3' -52.7 NC_004333.2 + 34194 0.66 0.816453
Target:  5'- aGCAGUaACgGUuucACGAUCaaUGCgACGGCc -3'
miRNA:   3'- aCGUCG-UGgUA---UGCUAG--AUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 33045 0.67 0.744834
Target:  5'- cGCcGCACgugCGUaGCGGUCgGCCACGaGCg -3'
miRNA:   3'- aCGuCGUG---GUA-UGCUAGaUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 31883 0.68 0.700963
Target:  5'- cGCGGCaaGCCAUGCGAagCgUGCCAaguCGGa -3'
miRNA:   3'- aCGUCG--UGGUAUGCUa-G-AUGGU---GCCg -5'
17213 3' -52.7 NC_004333.2 + 31429 0.66 0.825954
Target:  5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3'
miRNA:   3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 31385 0.66 0.786761
Target:  5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3'
miRNA:   3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31251 0.68 0.68642
Target:  5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 31083 0.68 0.712068
Target:  5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3'
miRNA:   3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 30833 0.68 0.698733
Target:  5'- cGCcGCGCCGUauguacaGCGAUUcggugagUACCuCGGCg -3'
miRNA:   3'- aCGuCGUGGUA-------UGCUAG-------AUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30425 0.66 0.816453
Target:  5'- cGC-GCGCCGUaGCGA-CUGCCuCGcGCc -3'
miRNA:   3'- aCGuCGUGGUA-UGCUaGAUGGuGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 30292 0.71 0.496506
Target:  5'- cGCGGCGC---GCGAUCgaucaggcagcggcUAUCACGGCa -3'
miRNA:   3'- aCGUCGUGguaUGCUAG--------------AUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30070 0.67 0.76609
Target:  5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 30000 0.66 0.816453
Target:  5'- cGCgAGCACCAUGCGGc--GCCGCu-- -3'
miRNA:   3'- aCG-UCGUGGUAUGCUagaUGGUGccg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.