miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 29947 0.77 0.221251
Target:  5'- cGCAGCGCUucgccgACGA-CUACCGCGcGCg -3'
miRNA:   3'- aCGUCGUGGua----UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 29891 0.7 0.576677
Target:  5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3'
miRNA:   3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29887 0.72 0.468106
Target:  5'- gGCgaAGCGCUGcGCGAUCggGCCGCGcGCg -3'
miRNA:   3'- aCG--UCGUGGUaUGCUAGa-UGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28944 0.66 0.825013
Target:  5'- cGCcgaGGCACgCGUuguucacGCGGUCgaaCGCGGCg -3'
miRNA:   3'- aCG---UCGUG-GUA-------UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28837 0.66 0.816453
Target:  5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3'
miRNA:   3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28739 0.69 0.640066
Target:  5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3'
miRNA:   3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 27598 0.66 0.776505
Target:  5'- cGCGGCACU-UGCGAUCga-CACGuCg -3'
miRNA:   3'- aCGUCGUGGuAUGCUAGaugGUGCcG- -5'
17213 3' -52.7 NC_004333.2 + 27367 0.67 0.755529
Target:  5'- gUGCGGUAgCCGUG-GAagUGCC-CGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAUgCUagAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 26049 0.69 0.633253
Target:  5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3'
miRNA:   3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 25942 0.66 0.816453
Target:  5'- cGCGGCGCgAUGCcggCgGCCaguacGCGGCg -3'
miRNA:   3'- aCGUCGUGgUAUGcuaGaUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 25131 0.75 0.29614
Target:  5'- gGCAGCGaCAgcGCGAUCaACUACGGCg -3'
miRNA:   3'- aCGUCGUgGUa-UGCUAGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 24290 0.66 0.825954
Target:  5'- gGCaAGCGCCGUuuuACGG-CgGCCagGCGGCc -3'
miRNA:   3'- aCG-UCGUGGUA---UGCUaGaUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 24187 0.66 0.796846
Target:  5'- cUGCAGCGCgaAUGCGA-CgguaccgGCCGCcuGGCc -3'
miRNA:   3'- -ACGUCGUGg-UAUGCUaGa------UGGUG--CCG- -5'
17213 3' -52.7 NC_004333.2 + 23975 0.68 0.667267
Target:  5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23486 0.68 0.667267
Target:  5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3'
miRNA:   3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23398 0.66 0.796846
Target:  5'- gGCGGUcacGCCGUACuGGUa-GCC-CGGCa -3'
miRNA:   3'- aCGUCG---UGGUAUG-CUAgaUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23092 0.71 0.510456
Target:  5'- cUGCAGCugCAU-CGGUUgcgucgGCUgaACGGCg -3'
miRNA:   3'- -ACGUCGugGUAuGCUAGa-----UGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23042 0.68 0.689785
Target:  5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3'
miRNA:   3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.