miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 22971 0.68 0.689785
Target:  5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3'
miRNA:   3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 22742 0.67 0.755529
Target:  5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3'
miRNA:   3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 22374 0.68 0.699848
Target:  5'- cGCAcGCGCCGaggaugGCcGUCUGCCaggucgaggcuucGCGGCg -3'
miRNA:   3'- aCGU-CGUGGUa-----UGcUAGAUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22180 0.71 0.521296
Target:  5'- gGCGGCgGCCGgcgGCGGUUcggcgGCUGCGGCc -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGa----UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22128 0.69 0.644607
Target:  5'- cGCuacGCGCCGUgcACGAUCUGuCCGCccGCg -3'
miRNA:   3'- aCGu--CGUGGUA--UGCUAGAU-GGUGc-CG- -5'
17213 3' -52.7 NC_004333.2 + 21163 0.7 0.565469
Target:  5'- aUGguGCGCUu--CGcgCUGCCGCaGGCc -3'
miRNA:   3'- -ACguCGUGGuauGCuaGAUGGUG-CCG- -5'
17213 3' -52.7 NC_004333.2 + 21090 0.67 0.744834
Target:  5'- cGCGGCcacuucgucGCCcgugACGG-CUGCCACGcGCu -3'
miRNA:   3'- aCGUCG---------UGGua--UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 20660 0.67 0.76609
Target:  5'- aGCcGCGCC-UGCaGAaacACCACGGCg -3'
miRNA:   3'- aCGuCGUGGuAUG-CUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 20573 0.68 0.689785
Target:  5'- gGCGGCgGCCGgcaGCGGUUg--CGCGGCa -3'
miRNA:   3'- aCGUCG-UGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 20467 0.69 0.644607
Target:  5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3'
miRNA:   3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 20315 0.66 0.800829
Target:  5'- gUGCGGCGCgAUGuaggccagucgcgguCGAUCgccGCCACGaaaGCg -3'
miRNA:   3'- -ACGUCGUGgUAU---------------GCUAGa--UGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 19546 0.67 0.755529
Target:  5'- aGCugaugGGCGCCGgucgcACGGUCgg-CGCGGCa -3'
miRNA:   3'- aCG-----UCGUGGUa----UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 19290 0.67 0.755529
Target:  5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3'
miRNA:   3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5'
17213 3' -52.7 NC_004333.2 + 18572 0.68 0.689785
Target:  5'- cUGCAGCGuCCGU-CGGcgUGCCggcaACGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAuGCUagAUGG----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 18540 0.66 0.816453
Target:  5'- gGCGGCaACCcggGUGCGG-CaGCCggcGCGGCg -3'
miRNA:   3'- aCGUCG-UGG---UAUGCUaGaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 18209 0.67 0.76609
Target:  5'- cGCGGCAUCGcaaUACGcgccggaaAUCUacgacGCCgACGGCa -3'
miRNA:   3'- aCGUCGUGGU---AUGC--------UAGA-----UGG-UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 17572 0.67 0.744834
Target:  5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3'
miRNA:   3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 16738 0.68 0.68642
Target:  5'- gGCAaaACCGUugaggaauggaacgACGAUCUGCgccgaCACGGCa -3'
miRNA:   3'- aCGUcgUGGUA--------------UGCUAGAUG-----GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 16654 0.66 0.806747
Target:  5'- cGaCAGCACUu--CGAcCUGCC-CGGUg -3'
miRNA:   3'- aC-GUCGUGGuauGCUaGAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 15985 0.7 0.599228
Target:  5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3'
miRNA:   3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.