miRNA display CGI


Results 81 - 100 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 15253 0.74 0.37101
Target:  5'- aGCAGCGCgAaaugagcgACGAUUUGCCgugcuGCGGCg -3'
miRNA:   3'- aCGUCGUGgUa-------UGCUAGAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 14812 0.68 0.689785
Target:  5'- cGCcGCACgCGcGCGAgcaggucauUCgcagACCACGGCg -3'
miRNA:   3'- aCGuCGUG-GUaUGCU---------AGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 14322 0.67 0.720893
Target:  5'- cGCGGCACCGUucgccgccucuuCGAUgUAgacgcgcgaCACGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-----------GCUAgAUg--------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13993 0.81 0.133648
Target:  5'- gGCGGCAgCGgccACGAUC-GCCACGGCa -3'
miRNA:   3'- aCGUCGUgGUa--UGCUAGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13929 0.69 0.644607
Target:  5'- cGCGGCGCgcucaAUGCGcUCga-CGCGGCg -3'
miRNA:   3'- aCGUCGUGg----UAUGCuAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13913 0.74 0.353306
Target:  5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3'
miRNA:   3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 13816 0.66 0.816453
Target:  5'- cGCGGCGuCC-UACGcgCUcgACUucaACGGCa -3'
miRNA:   3'- aCGUCGU-GGuAUGCuaGA--UGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 12286 0.66 0.806747
Target:  5'- -aCGGCACCGgcgGCGcgC-AUUGCGGCg -3'
miRNA:   3'- acGUCGUGGUa--UGCuaGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11930 0.66 0.806747
Target:  5'- cGCGcGCGCCAUuacGCGcgCU-CCA-GGCg -3'
miRNA:   3'- aCGU-CGUGGUA---UGCuaGAuGGUgCCG- -5'
17213 3' -52.7 NC_004333.2 + 11705 0.67 0.755529
Target:  5'- cGCAGCGCCGgGCGGcgUGCU--GGCg -3'
miRNA:   3'- aCGUCGUGGUaUGCUagAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 11513 0.66 0.825954
Target:  5'- cGCAGgaaUACCAcacaGCGGUCgaaggcgacgUGCUGCGGCa -3'
miRNA:   3'- aCGUC---GUGGUa---UGCUAG----------AUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11229 0.67 0.734016
Target:  5'- cGCGGCuccuuGCCGgcgcuCGAgugCUGCCagACGGCc -3'
miRNA:   3'- aCGUCG-----UGGUau---GCUa--GAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 10874 0.69 0.655948
Target:  5'- cGCGGU-CUGUGCG-UCUGCCAaauaguCGGCa -3'
miRNA:   3'- aCGUCGuGGUAUGCuAGAUGGU------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 10643 0.67 0.754465
Target:  5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3'
miRNA:   3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 9776 0.66 0.796846
Target:  5'- --gAGCGCCAcAUGGU-UGCCACGGa -3'
miRNA:   3'- acgUCGUGGUaUGCUAgAUGGUGCCg -5'
17213 3' -52.7 NC_004333.2 + 9608 0.72 0.47853
Target:  5'- cGCGGCAUCGgcCGGUugcgcaccggCUGCCGgCGGCg -3'
miRNA:   3'- aCGUCGUGGUauGCUA----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 9167 0.69 0.655948
Target:  5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3'
miRNA:   3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 8870 0.67 0.744834
Target:  5'- cGCGGCugCGgcGCGGUUaGCCGC-GCa -3'
miRNA:   3'- aCGUCGugGUa-UGCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 8652 0.67 0.744834
Target:  5'- cGCGGCGCCcgGCuugCUcgugacgguGCCGuCGGCg -3'
miRNA:   3'- aCGUCGUGGuaUGcuaGA---------UGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.