miRNA display CGI


Results 101 - 120 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 8429 0.69 0.633253
Target:  5'- cGguGcCGCCGacguUGAUCUGCC-CGGCc -3'
miRNA:   3'- aCguC-GUGGUau--GCUAGAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 7961 0.66 0.796846
Target:  5'- aGUAGuCGCCAUACGuggCaACCucgucguCGGCu -3'
miRNA:   3'- aCGUC-GUGGUAUGCua-GaUGGu------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 6826 0.71 0.508299
Target:  5'- gGCGGCACuCcgGCGGggcacucgucggCUACCGgCGGCu -3'
miRNA:   3'- aCGUCGUG-GuaUGCUa-----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 6672 0.68 0.667267
Target:  5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6565 0.78 0.192362
Target:  5'- aGCGGCGCgCGUACGcgcgaaagcccgcAUCgccGCCACGGCg -3'
miRNA:   3'- aCGUCGUG-GUAUGC-------------UAGa--UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6506 0.66 0.825954
Target:  5'- cGUGGaCAUgguaaUGUGCGAUUUGCCguACGGCa -3'
miRNA:   3'- aCGUC-GUG-----GUAUGCUAGAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6412 0.7 0.543235
Target:  5'- cGCAucguaaaaucGCGCgGUGCGGUCguccUCACGGCu -3'
miRNA:   3'- aCGU----------CGUGgUAUGCUAGau--GGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6394 0.66 0.805765
Target:  5'- gGgAGUACagaaucccacgcgCAUGCGGUCgUGCCguACGGCa -3'
miRNA:   3'- aCgUCGUG-------------GUAUGCUAG-AUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5936 0.67 0.756591
Target:  5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3'
miRNA:   3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 5618 0.76 0.266835
Target:  5'- cUGCAcucGCGCCAaGCcGUCgccgGCCACGGCa -3'
miRNA:   3'- -ACGU---CGUGGUaUGcUAGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5496 0.68 0.667267
Target:  5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3'
miRNA:   3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5'
17213 3' -52.7 NC_004333.2 + 4997 0.66 0.786761
Target:  5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3'
miRNA:   3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4953 0.71 0.532225
Target:  5'- aGCGcGCGCUAcAUGGUCaGCgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUaUGCUAGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 4856 0.7 0.543235
Target:  5'- cGCGcGCGCCGUGcCGAUgccgCUGCCGCcGCu -3'
miRNA:   3'- aCGU-CGUGGUAU-GCUA----GAUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 4638 0.68 0.700963
Target:  5'- --gAGCGCCAUcGCGAUCaugGCgACGGg -3'
miRNA:   3'- acgUCGUGGUA-UGCUAGa--UGgUGCCg -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 3678 0.68 0.700963
Target:  5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3'
miRNA:   3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5'
17213 3' -52.7 NC_004333.2 + 3610 0.69 0.641201
Target:  5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3'
miRNA:   3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 3110 0.75 0.311707
Target:  5'- gGCGGCcagcuGCCGUACGAUCUGaaguUCGCGcGCu -3'
miRNA:   3'- aCGUCG-----UGGUAUGCUAGAU----GGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 2996 0.7 0.565469
Target:  5'- aGCGGCACguUgACGGUCacgACCGCuGCg -3'
miRNA:   3'- aCGUCGUGguA-UGCUAGa--UGGUGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.