Results 121 - 128 of 128 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 17213 | 3' | -52.7 | NC_004333.2 | + | 2502 | 0.68 | 0.667267 |
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Target: 5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3' miRNA: 3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 2393 | 0.68 | 0.710961 |
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Target: 5'- aUGaCGGCGCCG-GCGGUC-GCCuggucgccguacaGCGGCa -3' miRNA: 3'- -AC-GUCGUGGUaUGCUAGaUGG-------------UGCCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 2337 | 0.7 | 0.587933 |
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Target: 5'- aUGCgAGCACCGUGCGGcCgUugCGCaGCu -3' miRNA: 3'- -ACG-UCGUGGUAUGCUaG-AugGUGcCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 2284 | 0.69 | 0.621898 |
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Target: 5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3' miRNA: 3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 1509 | 0.71 | 0.532225 |
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Target: 5'- cUGCAGCaagACCucACGAUC-ACCAaucCGGCg -3' miRNA: 3'- -ACGUCG---UGGuaUGCUAGaUGGU---GCCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 1452 | 0.66 | 0.796846 |
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Target: 5'- cGCGGCuuCAUGCGuUCguucaagGCCGCcgccGGCa -3' miRNA: 3'- aCGUCGugGUAUGCuAGa------UGGUG----CCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 691 | 0.66 | 0.776505 |
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Target: 5'- gGCAGCACCGgcccgcuguCGGgcaCUGCCuacguuacugAUGGCg -3' miRNA: 3'- aCGUCGUGGUau-------GCUa--GAUGG----------UGCCG- -5' |
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| 17213 | 3' | -52.7 | NC_004333.2 | + | 441 | 0.66 | 0.825954 |
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Target: 5'- gGCAGUGCgGaACGcaAUCU-UCACGGCg -3' miRNA: 3'- aCGUCGUGgUaUGC--UAGAuGGUGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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