miRNA display CGI


Results 41 - 60 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 9167 0.69 0.655948
Target:  5'- cGCAGCugCGcgcuUGCGuUCguucGCgACGGCa -3'
miRNA:   3'- aCGUCGugGU----AUGCuAGa---UGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13913 0.74 0.353306
Target:  5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3'
miRNA:   3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6826 0.71 0.508299
Target:  5'- gGCGGCACuCcgGCGGggcacucgucggCUACCGgCGGCu -3'
miRNA:   3'- aCGUCGUG-GuaUGCUa-----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 25942 0.66 0.816453
Target:  5'- cGCGGCGCgAUGCcggCgGCCaguacGCGGCg -3'
miRNA:   3'- aCGUCGUGgUAUGcuaGaUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 16654 0.66 0.806747
Target:  5'- cGaCAGCACUu--CGAcCUGCC-CGGUg -3'
miRNA:   3'- aC-GUCGUGGuauGCUaGAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 9776 0.66 0.796846
Target:  5'- --gAGCGCCAcAUGGU-UGCCACGGa -3'
miRNA:   3'- acgUCGUGGUaUGCUAgAUGGUGCCg -5'
17213 3' -52.7 NC_004333.2 + 46110 0.66 0.786761
Target:  5'- gGCcgAGCGCgGUGCGc---GCUACGGCa -3'
miRNA:   3'- aCG--UCGUGgUAUGCuagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 27367 0.67 0.755529
Target:  5'- gUGCGGUAgCCGUG-GAagUGCC-CGGCg -3'
miRNA:   3'- -ACGUCGU-GGUAUgCUagAUGGuGCCG- -5'
17213 3' -52.7 NC_004333.2 + 11229 0.67 0.734016
Target:  5'- cGCGGCuccuuGCCGgcgcuCGAgugCUGCCagACGGCc -3'
miRNA:   3'- aCGUCG-----UGGUau---GCUa--GAUGG--UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 2393 0.68 0.710961
Target:  5'- aUGaCGGCGCCG-GCGGUC-GCCuggucgccguacaGCGGCa -3'
miRNA:   3'- -AC-GUCGUGGUaUGCUAGaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 22374 0.68 0.699848
Target:  5'- cGCAcGCGCCGaggaugGCcGUCUGCCaggucgaggcuucGCGGCg -3'
miRNA:   3'- aCGU-CGUGGUa-----UGcUAGAUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 31251 0.68 0.68642
Target:  5'- cGCAGCGCCGUcuCGGUgUucgucagugcaagcACCAugcCGGCg -3'
miRNA:   3'- aCGUCGUGGUAu-GCUAgA--------------UGGU---GCCG- -5'
17213 3' -52.7 NC_004333.2 + 26049 0.69 0.633253
Target:  5'- cGguGCGCCG---GAUUUGCCAgUGGCg -3'
miRNA:   3'- aCguCGUGGUaugCUAGAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 21163 0.7 0.565469
Target:  5'- aUGguGCGCUu--CGcgCUGCCGCaGGCc -3'
miRNA:   3'- -ACguCGUGGuauGCuaGAUGGUG-CCG- -5'
17213 3' -52.7 NC_004333.2 + 33045 0.67 0.744834
Target:  5'- cGCcGCACgugCGUaGCGGUCgGCCACGaGCg -3'
miRNA:   3'- aCGuCGUG---GUA-UGCUAGaUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 6412 0.7 0.543235
Target:  5'- cGCAucguaaaaucGCGCgGUGCGGUCguccUCACGGCu -3'
miRNA:   3'- aCGU----------CGUGgUAUGCUAGau--GGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5'
17213 3' -52.7 NC_004333.2 + 46945 0.66 0.785743
Target:  5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3'
miRNA:   3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.