Results 61 - 80 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 28837 | 0.66 | 0.816453 |
Target: 5'- cGCcGCGacCCGcGCGGUCga-CGCGGCg -3' miRNA: 3'- aCGuCGU--GGUaUGCUAGaugGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2996 | 0.7 | 0.565469 |
Target: 5'- aGCGGCACguUgACGGUCacgACCGCuGCg -3' miRNA: 3'- aCGUCGUGguA-UGCUAGa--UGGUGcCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 3678 | 0.68 | 0.700963 |
Target: 5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3' miRNA: 3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 8485 | 0.68 | 0.700963 |
Target: 5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3' miRNA: 3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 4997 | 0.66 | 0.786761 |
Target: 5'- cGCAGUACgGcGCGAUgUuuuggaugGCgACGGCg -3' miRNA: 3'- aCGUCGUGgUaUGCUAgA--------UGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31385 | 0.66 | 0.786761 |
Target: 5'- uUGCgGGCGCCGUGC--UCgGCguCGGCg -3' miRNA: 3'- -ACG-UCGUGGUAUGcuAGaUGguGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46945 | 0.66 | 0.785743 |
Target: 5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3' miRNA: 3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20467 | 0.69 | 0.644607 |
Target: 5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3' miRNA: 3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 3610 | 0.69 | 0.641201 |
Target: 5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3' miRNA: 3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 33100 | 0.67 | 0.723091 |
Target: 5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3' miRNA: 3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 35819 | 0.69 | 0.633253 |
Target: 5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3' miRNA: 3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 2284 | 0.69 | 0.621898 |
Target: 5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3' miRNA: 3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 37559 | 0.7 | 0.599228 |
Target: 5'- gGCGGC-CCAUugcuCGAUCUGCaugcguuUGGCg -3' miRNA: 3'- aCGUCGuGGUAu---GCUAGAUGgu-----GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 15985 | 0.7 | 0.599228 |
Target: 5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3' miRNA: 3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 29891 | 0.7 | 0.576677 |
Target: 5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3' miRNA: 3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 36384 | 0.7 | 0.554319 |
Target: 5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3' miRNA: 3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 6412 | 0.7 | 0.543235 |
Target: 5'- cGCAucguaaaaucGCGCgGUGCGGUCguccUCACGGCu -3' miRNA: 3'- aCGU----------CGUGgUAUGCUAGau--GGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 4953 | 0.71 | 0.532225 |
Target: 5'- aGCGcGCGCUAcAUGGUCaGCgGCGGCa -3' miRNA: 3'- aCGU-CGUGGUaUGCUAGaUGgUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 30292 | 0.71 | 0.496506 |
Target: 5'- cGCGGCGC---GCGAUCgaucaggcagcggcUAUCACGGCa -3' miRNA: 3'- aCGUCGUGguaUGCUAG--------------AUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 28739 | 0.69 | 0.640066 |
Target: 5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3' miRNA: 3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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