Results 81 - 100 of 128 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 2502 | 0.68 | 0.667267 |
Target: 5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3' miRNA: 3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 5496 | 0.68 | 0.667267 |
Target: 5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3' miRNA: 3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 28739 | 0.69 | 0.640066 |
Target: 5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3' miRNA: 3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 35819 | 0.69 | 0.633253 |
Target: 5'- cGCGGUAUC-UGC--UCUGCUAUGGCa -3' miRNA: 3'- aCGUCGUGGuAUGcuAGAUGGUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 2284 | 0.69 | 0.621898 |
Target: 5'- cGCGGCgaacaACUAcACGAUCgcgUACgACGGCa -3' miRNA: 3'- aCGUCG-----UGGUaUGCUAG---AUGgUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 37559 | 0.7 | 0.599228 |
Target: 5'- gGCGGC-CCAUugcuCGAUCUGCaugcguuUGGCg -3' miRNA: 3'- aCGUCGuGGUAu---GCUAGAUGgu-----GCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 15985 | 0.7 | 0.599228 |
Target: 5'- gGCgauGGCACCGUggGCGGucgcaucgUCUACgAUGGCg -3' miRNA: 3'- aCG---UCGUGGUA--UGCU--------AGAUGgUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 29891 | 0.7 | 0.576677 |
Target: 5'- gGCGGCGCg--GCGAUCaGCaucaACGGCc -3' miRNA: 3'- aCGUCGUGguaUGCUAGaUGg---UGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 2996 | 0.7 | 0.565469 |
Target: 5'- aGCGGCACguUgACGGUCacgACCGCuGCg -3' miRNA: 3'- aCGUCGUGguA-UGCUAGa--UGGUGcCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 36384 | 0.7 | 0.554319 |
Target: 5'- aUGCGaCGCCcgGCGA-CUACUcggGCGGCg -3' miRNA: 3'- -ACGUcGUGGuaUGCUaGAUGG---UGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 3610 | 0.69 | 0.641201 |
Target: 5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3' miRNA: 3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 20467 | 0.69 | 0.644607 |
Target: 5'- aGCGGCgcgGCCAcUGCG----GCCACGGCc -3' miRNA: 3'- aCGUCG---UGGU-AUGCuagaUGGUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 6672 | 0.68 | 0.667267 |
Target: 5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3' miRNA: 3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 23975 | 0.68 | 0.667267 |
Target: 5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3' miRNA: 3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 23486 | 0.68 | 0.667267 |
Target: 5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3' miRNA: 3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 45094 | 0.68 | 0.667267 |
Target: 5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3' miRNA: 3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 10874 | 0.69 | 0.655948 |
Target: 5'- cGCGGU-CUGUGCG-UCUGCCAaauaguCGGCa -3' miRNA: 3'- aCGUCGuGGUAUGCuAGAUGGU------GCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 47822 | 0.69 | 0.655948 |
Target: 5'- gUGCuuGGCACagucggccggggUGUACGAg--GCCACGGCg -3' miRNA: 3'- -ACG--UCGUG------------GUAUGCUagaUGGUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 13929 | 0.69 | 0.644607 |
Target: 5'- cGCGGCGCgcucaAUGCGcUCga-CGCGGCg -3' miRNA: 3'- aCGUCGUGg----UAUGCuAGaugGUGCCG- -5' |
|||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 22128 | 0.69 | 0.644607 |
Target: 5'- cGCuacGCGCCGUgcACGAUCUGuCCGCccGCg -3' miRNA: 3'- aCGu--CGUGGUA--UGCUAGAU-GGUGc-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home