miRNA display CGI


Results 101 - 120 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 28739 0.69 0.640066
Target:  5'- aGCAcGCACCGgaauucugcgaccGCGAUCcggcgACUugGGCg -3'
miRNA:   3'- aCGU-CGUGGUa------------UGCUAGa----UGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 3610 0.69 0.641201
Target:  5'- cGCGGCACCGcguugaucccgcuuUAcgcCGAUCaGCCGCaGCa -3'
miRNA:   3'- aCGUCGUGGU--------------AU---GCUAGaUGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 37673 0.74 0.353306
Target:  5'- aUGCAGCACCGgcgACGAuucgaacaUCaACCgugACGGCu -3'
miRNA:   3'- -ACGUCGUGGUa--UGCU--------AGaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 3110 0.75 0.311707
Target:  5'- gGCGGCcagcuGCCGUACGAUCUGaaguUCGCGcGCu -3'
miRNA:   3'- aCGUCG-----UGGUAUGCUAGAU----GGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 34261 0.75 0.311707
Target:  5'- cGCAGUACCAguCGcAUCgUACCAgGGCa -3'
miRNA:   3'- aCGUCGUGGUauGC-UAG-AUGGUgCCG- -5'
17213 3' -52.7 NC_004333.2 + 23042 0.68 0.689785
Target:  5'- -cCGGUACC--GCGAcgCUGCCGgCGGCg -3'
miRNA:   3'- acGUCGUGGuaUGCUa-GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 22971 0.68 0.689785
Target:  5'- gGCAGCACCGcGCu-UCUGCucguCACGaGCg -3'
miRNA:   3'- aCGUCGUGGUaUGcuAGAUG----GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 39350 0.68 0.678549
Target:  5'- aGCAGCcaACC-UGCGAUCgcGCgCGCGuGCg -3'
miRNA:   3'- aCGUCG--UGGuAUGCUAGa-UG-GUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 2502 0.68 0.667267
Target:  5'- cGCcGCGCCGUACcaaggcacgCUGCCgcuguACGGCg -3'
miRNA:   3'- aCGuCGUGGUAUGcua------GAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5496 0.68 0.667267
Target:  5'- cGCAGaUGCCG-ACGAcgCUGCCGCgauGGCa -3'
miRNA:   3'- aCGUC-GUGGUaUGCUa-GAUGGUG---CCG- -5'
17213 3' -52.7 NC_004333.2 + 6672 0.68 0.667267
Target:  5'- cUGCGGCGCUggGCGGcgcGCCgugGCGGCg -3'
miRNA:   3'- -ACGUCGUGGuaUGCUagaUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23975 0.68 0.667267
Target:  5'- cGUAcGCGCCGUucggcuuccgcACGAUgaACgGCGGCa -3'
miRNA:   3'- aCGU-CGUGGUA-----------UGCUAgaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 23486 0.68 0.667267
Target:  5'- gGCGGCGgguaCGUGcCGggCUACCaguACGGCg -3'
miRNA:   3'- aCGUCGUg---GUAU-GCuaGAUGG---UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 10874 0.69 0.655948
Target:  5'- cGCGGU-CUGUGCG-UCUGCCAaauaguCGGCa -3'
miRNA:   3'- aCGUCGuGGUAUGCuAGAUGGU------GCCG- -5'
17213 3' -52.7 NC_004333.2 + 45094 0.68 0.667267
Target:  5'- cGcCAGCGCCAcgcGCGGUCga--GCGGCc -3'
miRNA:   3'- aC-GUCGUGGUa--UGCUAGauggUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 47822 0.69 0.655948
Target:  5'- gUGCuuGGCACagucggccggggUGUACGAg--GCCACGGCg -3'
miRNA:   3'- -ACG--UCGUG------------GUAUGCUagaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13993 0.81 0.133648
Target:  5'- gGCGGCAgCGgccACGAUC-GCCACGGCa -3'
miRNA:   3'- aCGUCGUgGUa--UGCUAGaUGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29947 0.77 0.221251
Target:  5'- cGCAGCGCUucgccgACGA-CUACCGCGcGCg -3'
miRNA:   3'- aCGUCGUGGua----UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 5618 0.76 0.266835
Target:  5'- cUGCAcucGCGCCAaGCcGUCgccgGCCACGGCa -3'
miRNA:   3'- -ACGU---CGUGGUaUGcUAGa---UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 25131 0.75 0.29614
Target:  5'- gGCAGCGaCAgcGCGAUCaACUACGGCg -3'
miRNA:   3'- aCGUCGUgGUa-UGCUAGaUGGUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.