Results 41 - 60 of 128 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
17213 | 3' | -52.7 | NC_004333.2 | + | 41493 | 0.66 | 0.825954 |
Target: 5'- aGCAGCGCCuguuCGAUCaugugCGCGuGCu -3' miRNA: 3'- aCGUCGUGGuau-GCUAGaug--GUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 24290 | 0.66 | 0.825954 |
Target: 5'- gGCaAGCGCCGUuuuACGG-CgGCCagGCGGCc -3' miRNA: 3'- aCG-UCGUGGUA---UGCUaGaUGG--UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 11513 | 0.66 | 0.825954 |
Target: 5'- cGCAGgaaUACCAcacaGCGGUCgaaggcgacgUGCUGCGGCa -3' miRNA: 3'- aCGUC---GUGGUa---UGCUAG----------AUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 47281 | 0.66 | 0.825954 |
Target: 5'- aGUAGCGcgcCCGUcgcgGCGAcuugugccUCUGCUgcGCGGCa -3' miRNA: 3'- aCGUCGU---GGUA----UGCU--------AGAUGG--UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31429 | 0.66 | 0.825954 |
Target: 5'- cGCGGCugCGUcgcucggcaGCGGUCUgaugaaGCUggcCGGCa -3' miRNA: 3'- aCGUCGugGUA---------UGCUAGA------UGGu--GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 46945 | 0.66 | 0.785743 |
Target: 5'- cGCGGCACU---CGGUUUcuuucgaGCgCACGGCg -3' miRNA: 3'- aCGUCGUGGuauGCUAGA-------UG-GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 691 | 0.66 | 0.776505 |
Target: 5'- gGCAGCACCGgcccgcuguCGGgcaCUGCCuacguuacugAUGGCg -3' miRNA: 3'- aCGUCGUGGUau-------GCUa--GAUGG----------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 3678 | 0.68 | 0.700963 |
Target: 5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3' miRNA: 3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 31083 | 0.68 | 0.712068 |
Target: 5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3' miRNA: 3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 33100 | 0.67 | 0.723091 |
Target: 5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3' miRNA: 3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 17572 | 0.67 | 0.744834 |
Target: 5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3' miRNA: 3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 21090 | 0.67 | 0.744834 |
Target: 5'- cGCGGCcacuucgucGCCcgugACGG-CUGCCACGcGCu -3' miRNA: 3'- aCGUCG---------UGGua--UGCUaGAUGGUGC-CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 10643 | 0.67 | 0.754465 |
Target: 5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3' miRNA: 3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 41709 | 0.67 | 0.755529 |
Target: 5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3' miRNA: 3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 22742 | 0.67 | 0.755529 |
Target: 5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3' miRNA: 3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 19290 | 0.67 | 0.755529 |
Target: 5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3' miRNA: 3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 5936 | 0.67 | 0.756591 |
Target: 5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3' miRNA: 3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 30070 | 0.67 | 0.76609 |
Target: 5'- aGCGGCGCCGcAUGGUgCUcgcGCU-CGGCg -3' miRNA: 3'- aCGUCGUGGUaUGCUA-GA---UGGuGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 20660 | 0.67 | 0.76609 |
Target: 5'- aGCcGCGCC-UGCaGAaacACCACGGCg -3' miRNA: 3'- aCGuCGUGGuAUG-CUagaUGGUGCCG- -5' |
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17213 | 3' | -52.7 | NC_004333.2 | + | 27598 | 0.66 | 0.776505 |
Target: 5'- cGCGGCACU-UGCGAUCga-CACGuCg -3' miRNA: 3'- aCGUCGUGGuAUGCUAGaugGUGCcG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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