miRNA display CGI


Results 61 - 80 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 3' -52.7 NC_004333.2 + 28960 0.68 0.700963
Target:  5'- gGCcuGCGCCGagcGCGAUCg--CGCGGCa -3'
miRNA:   3'- aCGu-CGUGGUa--UGCUAGaugGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 8485 0.68 0.700963
Target:  5'- gGCGGCACCGUaucgGCGAcgUUGCucgaCACGGg -3'
miRNA:   3'- aCGUCGUGGUA----UGCUa-GAUG----GUGCCg -5'
17213 3' -52.7 NC_004333.2 + 3678 0.68 0.700963
Target:  5'- cGCAgGCGCCcgacugggcgaAUACGAUC-GCCGCgauguGGCg -3'
miRNA:   3'- aCGU-CGUGG-----------UAUGCUAGaUGGUG-----CCG- -5'
17213 3' -52.7 NC_004333.2 + 31083 0.68 0.712068
Target:  5'- aGCAGCugCA-GCGcacCUACCGCGcgaGCa -3'
miRNA:   3'- aCGUCGugGUaUGCua-GAUGGUGC---CG- -5'
17213 3' -52.7 NC_004333.2 + 33100 0.67 0.723091
Target:  5'- gUGCGGCGCUcaaaGCGAUCgacGCCgaucccgauaGCGGUa -3'
miRNA:   3'- -ACGUCGUGGua--UGCUAGa--UGG----------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 5936 0.67 0.756591
Target:  5'- aGCGGCACCAcggGCGuggcgugcauaaaUACCGgcCGGCg -3'
miRNA:   3'- aCGUCGUGGUa--UGCuag----------AUGGU--GCCG- -5'
17213 3' -52.7 NC_004333.2 + 19290 0.67 0.755529
Target:  5'- uUGCucgAGCGCCGUGCGGaacGCCGCGa- -3'
miRNA:   3'- -ACG---UCGUGGUAUGCUagaUGGUGCcg -5'
17213 3' -52.7 NC_004333.2 + 22742 0.67 0.755529
Target:  5'- uUGCAGUcacguuucccaaGCCGUucGCGcauggUUGCCugGGCg -3'
miRNA:   3'- -ACGUCG------------UGGUA--UGCua---GAUGGugCCG- -5'
17213 3' -52.7 NC_004333.2 + 41709 0.67 0.755529
Target:  5'- cGCAGCccgcGCCcgACaAUCUGCCGCcagaGCa -3'
miRNA:   3'- aCGUCG----UGGuaUGcUAGAUGGUGc---CG- -5'
17213 3' -52.7 NC_004333.2 + 10643 0.67 0.754465
Target:  5'- cGUAGCACCGccUGCGAUgcGCCcgauaaacgcgcgAUGGCc -3'
miRNA:   3'- aCGUCGUGGU--AUGCUAgaUGG-------------UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 21090 0.67 0.744834
Target:  5'- cGCGGCcacuucgucGCCcgugACGG-CUGCCACGcGCu -3'
miRNA:   3'- aCGUCG---------UGGua--UGCUaGAUGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 17572 0.67 0.744834
Target:  5'- cUGCAGCAgguCgGUGCGGUCgagUGCgagcagcgugagCGCGGCg -3'
miRNA:   3'- -ACGUCGU---GgUAUGCUAG---AUG------------GUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 6826 0.71 0.508299
Target:  5'- gGCGGCACuCcgGCGGggcacucgucggCUACCGgCGGCu -3'
miRNA:   3'- aCGUCGUG-GuaUGCUa-----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 9608 0.72 0.47853
Target:  5'- cGCGGCAUCGgcCGGUugcgcaccggCUGCCGgCGGCg -3'
miRNA:   3'- aCGUCGUGGUauGCUA----------GAUGGU-GCCG- -5'
17213 3' -52.7 NC_004333.2 + 29887 0.72 0.468106
Target:  5'- gGCgaAGCGCUGcGCGAUCggGCCGCGcGCg -3'
miRNA:   3'- aCG--UCGUGGUaUGCUAGa-UGGUGC-CG- -5'
17213 3' -52.7 NC_004333.2 + 3911 0.74 0.37101
Target:  5'- gGUAGCGCCAgGCGG-CaGCgGCGGCa -3'
miRNA:   3'- aCGUCGUGGUaUGCUaGaUGgUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 15253 0.74 0.37101
Target:  5'- aGCAGCGCgAaaugagcgACGAUUUGCCgugcuGCGGCg -3'
miRNA:   3'- aCGUCGUGgUa-------UGCUAGAUGG-----UGCCG- -5'
17213 3' -52.7 NC_004333.2 + 13913 0.74 0.353306
Target:  5'- gGCGGCuGCCGUgGCGAUCgugGCCGCuGCc -3'
miRNA:   3'- aCGUCG-UGGUA-UGCUAGa--UGGUGcCG- -5'
17213 3' -52.7 NC_004333.2 + 6565 0.78 0.192362
Target:  5'- aGCGGCGCgCGUACGcgcgaaagcccgcAUCgccGCCACGGCg -3'
miRNA:   3'- aCGUCGUG-GUAUGC-------------UAGa--UGGUGCCG- -5'
17213 3' -52.7 NC_004333.2 + 29045 0.66 0.825954
Target:  5'- aGCAccGCGCCGcccACGAUCgcGCCGaguUGGCg -3'
miRNA:   3'- aCGU--CGUGGUa--UGCUAGa-UGGU---GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.