miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17213 5' -64.1 NC_004333.2 + 42766 0.67 0.229428
Target:  5'- -cGCCGCccgcucgUCGGCCG-GCGUggagacgaucGGCGCUGu -3'
miRNA:   3'- gcCGGCG-------AGCUGGCgCGCA----------CCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 48004 0.67 0.227721
Target:  5'- uCGGCgcguucugGCUUGcCCGCGCGcucuggcguguugGGCGCUGg -3'
miRNA:   3'- -GCCGg-------CGAGCuGGCGCGCa------------CCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 11902 0.67 0.224341
Target:  5'- cCGGCgcaaGCUgGAgCGCGcCGUcGCGCUGa -3'
miRNA:   3'- -GCCGg---CGAgCUgGCGC-GCAcCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 9630 0.68 0.218802
Target:  5'- cCGGCUGC-CGGCgGCGCGccuGCGCc- -3'
miRNA:   3'- -GCCGGCGaGCUGgCGCGCac-CGCGac -5'
17213 5' -64.1 NC_004333.2 + 30394 0.68 0.21338
Target:  5'- gCGGCCGCgCGuAUgGCGgGUGGUGUc- -3'
miRNA:   3'- -GCCGGCGaGC-UGgCGCgCACCGCGac -5'
17213 5' -64.1 NC_004333.2 + 30029 0.68 0.21338
Target:  5'- gCGGCCGCgcUCGGCaCGCGCuuuucGCGCa- -3'
miRNA:   3'- -GCCGGCG--AGCUG-GCGCGcac--CGCGac -5'
17213 5' -64.1 NC_004333.2 + 28962 0.68 0.21338
Target:  5'- cCGGCCuGCgccgagcgCGAUCGCGCGgcacGaGCGCUu -3'
miRNA:   3'- -GCCGG-CGa-------GCUGGCGCGCa---C-CGCGAc -5'
17213 5' -64.1 NC_004333.2 + 9155 0.68 0.21338
Target:  5'- -uGCCuGCUCGACCGCaGC-UGcGCGCUu -3'
miRNA:   3'- gcCGG-CGAGCUGGCG-CGcAC-CGCGAc -5'
17213 5' -64.1 NC_004333.2 + 38972 0.68 0.208074
Target:  5'- uGGCCGUgcCGAUCaGCGCGaagcGGCGCg- -3'
miRNA:   3'- gCCGGCGa-GCUGG-CGCGCa---CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 22442 0.68 0.208074
Target:  5'- aCGGCCaucCUCGG-CGCGUGcGGCGCa- -3'
miRNA:   3'- -GCCGGc--GAGCUgGCGCGCaCCGCGac -5'
17213 5' -64.1 NC_004333.2 + 39224 0.68 0.205984
Target:  5'- uCGGCCgagcugcgugcaauGCUCGACCGCaccccgaGCGgccggcaGGCGCa- -3'
miRNA:   3'- -GCCGG--------------CGAGCUGGCG-------CGCa------CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 32818 0.68 0.202882
Target:  5'- cCGGCgGCagCGACCuGCGCGUGaCGUUc -3'
miRNA:   3'- -GCCGgCGa-GCUGG-CGCGCACcGCGAc -5'
17213 5' -64.1 NC_004333.2 + 6732 0.68 0.202882
Target:  5'- gCGcGCCuGCUCGAgCGCGCcgaGcGCGCUGc -3'
miRNA:   3'- -GC-CGG-CGAGCUgGCGCGca-C-CGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 20515 0.68 0.202882
Target:  5'- cCGGCCGC-CG-CCGCGCcgcuCGCUGg -3'
miRNA:   3'- -GCCGGCGaGCuGGCGCGcaccGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 29029 0.68 0.198306
Target:  5'- -cGCCGCguUCGACCGCGUGaacaacgcgugccucGGCGCg- -3'
miRNA:   3'- gcCGGCG--AGCUGGCGCGCa--------------CCGCGac -5'
17213 5' -64.1 NC_004333.2 + 47013 0.68 0.197803
Target:  5'- gCGcGCCGcCUUGGCUGCGCGcgaggcuucgcGGCGCUc -3'
miRNA:   3'- -GC-CGGC-GAGCUGGCGCGCa----------CCGCGAc -5'
17213 5' -64.1 NC_004333.2 + 29411 0.68 0.197803
Target:  5'- -cGCCGUUCG-CCGuCGC--GGCGCUGg -3'
miRNA:   3'- gcCGGCGAGCuGGC-GCGcaCCGCGAC- -5'
17213 5' -64.1 NC_004333.2 + 29434 0.68 0.187978
Target:  5'- aCGaGCCGCUUGAagUGCGCGUGcgacaGCGCa- -3'
miRNA:   3'- -GC-CGGCGAGCUg-GCGCGCAC-----CGCGac -5'
17213 5' -64.1 NC_004333.2 + 47611 0.69 0.183228
Target:  5'- aCGGCCGuUUCGACuUGUGCGuUGGCGa-- -3'
miRNA:   3'- -GCCGGC-GAGCUG-GCGCGC-ACCGCgac -5'
17213 5' -64.1 NC_004333.2 + 6822 0.69 0.178584
Target:  5'- aGG-CGCgCGACCgggGCGcCGUGGCGCUc -3'
miRNA:   3'- gCCgGCGaGCUGG---CGC-GCACCGCGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.