miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
17214 3' -53.7 NC_004333.2 + 4809 0.66 0.769287
Target:  5'- --uGAAAGCuGGCGuGCUcGCGGGcGCGAc -3'
miRNA:   3'- guuCUUUUG-CCGCcUGA-CGCUC-CGCU- -5'
17214 3' -53.7 NC_004333.2 + 42980 0.66 0.769287
Target:  5'- -------cCGGCGGACgaGCG-GGCGGc -3'
miRNA:   3'- guucuuuuGCCGCCUGa-CGCuCCGCU- -5'
17214 3' -53.7 NC_004333.2 + 47321 0.66 0.758876
Target:  5'- ---cGGAGCGGCuGACUGUGcuGCGAu -3'
miRNA:   3'- guucUUUUGCCGcCUGACGCucCGCU- -5'
17214 3' -53.7 NC_004333.2 + 38954 0.66 0.758876
Target:  5'- ---cGAAGCGGCGcGGgUGCGcggacGGGCGGc -3'
miRNA:   3'- guucUUUUGCCGC-CUgACGC-----UCCGCU- -5'
17214 3' -53.7 NC_004333.2 + 6822 0.67 0.716
Target:  5'- -----cAACGGCGGcACUccgGCGGGGCa- -3'
miRNA:   3'- guucuuUUGCCGCC-UGA---CGCUCCGcu -5'
17214 3' -53.7 NC_004333.2 + 45940 0.67 0.693995
Target:  5'- gCGAGAAGcagcucguCGaGCGGAUgugucgcgGCGAGGCGu -3'
miRNA:   3'- -GUUCUUUu-------GC-CGCCUGa-------CGCUCCGCu -5'
17214 3' -53.7 NC_004333.2 + 20189 0.67 0.692887
Target:  5'- aCAAGAAGGCGGCaguaauGGGC-GCGGcucgcgcuuucguGGCGGc -3'
miRNA:   3'- -GUUCUUUUGCCG------CCUGaCGCU-------------CCGCU- -5'
17214 3' -53.7 NC_004333.2 + 3069 0.68 0.638094
Target:  5'- ------cGCGGCGGAC-GCGccGGCGAg -3'
miRNA:   3'- guucuuuUGCCGCCUGaCGCu-CCGCU- -5'
17214 3' -53.7 NC_004333.2 + 12470 0.68 0.615617
Target:  5'- --cGAAGGCGGCGacacuGGCgcgccggGCGGGGCGc -3'
miRNA:   3'- guuCUUUUGCCGC-----CUGa------CGCUCCGCu -5'
17214 3' -53.7 NC_004333.2 + 3181 0.69 0.604396
Target:  5'- uCGAGAAcugguuCGGCGcGCUGUcgaacGAGGCGAa -3'
miRNA:   3'- -GUUCUUuu----GCCGCcUGACG-----CUCCGCU- -5'
17214 3' -53.7 NC_004333.2 + 13902 0.69 0.593199
Target:  5'- aCGGGcugcGCGGCGG-CUGCcGuGGCGAu -3'
miRNA:   3'- -GUUCuuu-UGCCGCCuGACG-CuCCGCU- -5'
17214 3' -53.7 NC_004333.2 + 19612 0.71 0.474112
Target:  5'- aCAAGGucACGGCGaGCgcgGCGAGcGCGGc -3'
miRNA:   3'- -GUUCUuuUGCCGCcUGa--CGCUC-CGCU- -5'
17214 3' -53.7 NC_004333.2 + 37101 0.72 0.423977
Target:  5'- --cGAGGACGuCGGgcaGCUGCGGGGCGu -3'
miRNA:   3'- guuCUUUUGCcGCC---UGACGCUCCGCu -5'
17214 3' -53.7 NC_004333.2 + 45083 1.09 0.001299
Target:  5'- gCAAGAAAACGGCGGACUGCGAGGCGAu -3'
miRNA:   3'- -GUUCUUUUGCCGCCUGACGCUCCGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.